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Record W2906653622 · doi:10.1126/sciimmunol.aau8714

Tuberculosis and impaired IL-23–dependent IFN-γ immunity in humans homozygous for a common <i>TYK2</i> missense variant

2018· article· en· W2906653622 on OpenAlexafffund
Stéphanie Boisson‐Dupuis, Noé Ramirez‐Alejo, Zhi Li, Étienne Patin, Geetha Rao, Gaspard Kerner, Che Kang Lim, Dimitry N. Krementsov, Nicholas Hernandez, S. Cindy, Qian Zhang, Janet Markle, Rubén Martínez‐Barricarte, Kathryn Payne, Robert O. Fisch, Caroline Deswarte, Joshua Halpern, Matthieu Bouaziz, Jeanette Mulwa, Durga Sivanesan, Tomi Lazarov, Rodrigo Naves, Patricia García, Yuval Itan, Bertrand Boisson, Alix Checchi, Fabienne Jabot‐Hanin, Aurélie Cobat, Andrea Guennoun, Carolyn C. Jackson, Sevgi Pekcan, Zafer Çalışkaner, Jaime Inostroza, Beatriz Tavares Costa‐Carvalho, José Antônio Tavares de Albuquerque, Humberto Garcia‐Ortíz, Lorena Orozco, Tayfun Özçelık, A. Abid, Ismail Abderahmani Rhorfi, Hicham Souhi, Hicham Naji Amrani, Adil Zegmout, Frédéric Geissmann, Stephen W. Michnick, Ingrid Müller‐Fleckenstein, Bernhard Fleckenstein, Anne Puel, Michael J. Ciancanelli, Nico Marr, Hassan Abolhassani, María Elvira Balcells, Antônio Condino‐Neto, Alexis Strickler, Katia Abarca, Cory Teuscher, Hans D. Ochs, İsmail Reisli, Esra Hazar Sayar, Jamila El Baghdadi, Jacinta Bustamante, Lennart Hammarström, Stuart G. Tangye, Sandra Pellegrini, Lluís Quintana‐Murci, Laurent Abel, Jean‐Laurent Casanova

Bibliographic record

VenueScience Immunology · 2018
Typearticle
Languageen
FieldImmunology and Microbiology
TopicImmunodeficiency and Autoimmune Disorders
Canadian institutionsUniversité de MontréalUniversity of Ottawa
FundersFondo Nacional de Desarrollo Científico y TecnológicoNational Institute of General Medical SciencesNational Cancer InstituteNational Health and Medical Research CouncilEuropean Research CouncilNational Institutes of HealthNew South Wales GovernmentCentre National de la Recherche ScientifiqueConselho Nacional de Desenvolvimento Científico e TecnológicoMedical Research CouncilDepartment of Health and Social CareNational Center for Advancing Translational SciencesNational Human Genome Research InstituteCHIST-ERANational Institute of Allergy and Infectious DiseasesNational Center for Research ResourcesAgence Nationale de la RechercheConsejo Nacional de Ciencia y TecnologíaStony Wold-Herbert FundDamon Runyon Cancer Research FoundationAgence Nationale de Sécurité du Médicament et des Produits de SantéSt. Giles FoundationOffice of Health and Medical ResearchCanadian Institutes of Health ResearchHoward Hughes Medical Institute
KeywordsMissense mutationBiologyImmunityTuberculosisTyrosine kinase 2ImmunologyEtiologyGeneticsImmune systemVirologyMedicineMutationGeneReceptorPathology

Abstract

fetched live from OpenAlex

selectively disrupts the induction of IFN-γ by IL-23 and is a common monogenic etiology of tuberculosis.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.004
Threshold uncertainty score0.013

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0020.000
Meta-epidemiology (broad)0.0000.001
Bibliometrics0.0010.000
Science and technology studies0.0010.001
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0020.001
Insufficient payload (model declined to judge)0.0040.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.011
GPT teacher head0.255
Teacher spread0.245 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations209
Published2018
Admission routes2
Has abstractyes

Explore more

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