MétaCan
Menu
Back to cohort
Record W2908873098 · doi:10.7717/peerj.6168

Microbiota variations in<i>Culex nigripalpus</i>disease vector mosquito of West Nile virus and Saint Louis Encephalitis from different geographic origins

2019· article· en· W2908873098 on OpenAlexaff
Dagne Duguma, Michael Hall, Chelsea T. Smartt, Mustapha Debboun, Josh D. Neufeld

Bibliographic record

VenuePeerJ · 2019
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicInsect symbiosis and bacterial influences
Canadian institutionsUniversity of WaterlooDalhousie University
Fundersnot available
KeywordsGammaproteobacteriaBiologyCulexAlphaproteobacteriaArbovirusVector (molecular biology)EcologyVirology16S ribosomal RNAVirusBacteria

Abstract

fetched live from OpenAlex

Although mosquito microbiota are known to influence reproduction, nutrition, disease transmission, and pesticide resistance, the relationship between host-associated microbial community composition and geographical location is poorly understood. To begin addressing this knowledge gap, we characterized microbiota associated with adult females ofCulex nigripalpusmosquito vectors of Saint Louis Encephalitis and West Nile viruses sampled from three locations in Florida (Vero Beach, Palmetto Inland, and Palmetto Coast). High-throughput sequencing of PCR-amplified 16S rRNA genes demonstrated significant differences among microbial communities of mosquitoes sampled from the three locations. Mosquitoes from Vero Beach (east coast Florida) were dominated by uncultivatedAsaiasp. (Alphaproteobacteria), whereas microbiota associated with mosquitoes collected from two mosquito populations at Palmetto (west coast Florida) sites were dominated by unculturedSpironema culicis(Spirochaetes),Salinisphaera hydrothermalis(Gammaproteobacteria),Spiroplasma(Mollicutes), unculturedEnterobacteriaceae, Candidatus Megaira (Alphaproteobacteria;Rickettsiae), andZymobacter(Gammaproteobacteria). The variation in taxonomic profiles ofCx. nigripalpusgut microbial communities, especially with respect to dominating taxa, is a potentially critical factor in understanding disease transmission and mosquito susceptibility to insecticides among different mosquito populations.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.007
Threshold uncertainty score0.015

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.197
Teacher spread0.189 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations45
Published2019
Admission routes1
Has abstractyes

Explore more

Same venuePeerJSame topicInsect symbiosis and bacterial influencesFrench-language works237,207