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Record W2911794361 · doi:10.1002/tax.603015

Taxonomy and biogeography of <i>Agarum</i> and <i>Thalassiophyllum</i> (Laminariales, Phaeophyceae) based on sequences of nuclear, mitochondrial, and plastid markers

2011· article· en· W2911794361 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueTaxon · 2011
Typearticle
Languageen
FieldEarth and Planetary Sciences
TopicMarine and coastal plant biology
Canadian institutionsUniversity of British Columbia
Fundersnot available
KeywordsBiologyCladeSubspeciesGenusBiological dispersalPlastidPhylogenetic treeEvolutionary biologyTaxonomy (biology)Cosmopolitan distributionBiogeographyBotanyZoologyEcologyGenetics

Abstract

fetched live from OpenAlex

Abstract Agarum is a perennial kelp genus that has a broad distribution from the northwest Pacific to the northwest Atlantic Ocean. In order to address questions regarding phylogenetic relationships and present‐day distribution patterns of species within this genus, we analyzed the nuclear ITS2, mitochondrial cox1 and cox3, and plastid RuBisCO spacer from a subset of 130 samples of the genus plus Thalassiophyllum and Costaria. All analyses of the individual markers and the ITS2 + cox1 + cox3 dataset consistently produced a clade of Agarum that included Thalassiophyllum . The clade consisted of two well‐resolved subclades: one composed of A. fimbriatum and A. oharaense, and the other of A. clathratum , A. turneri , A. yakishiriense , and T. clathrus (the type of the generic name Thalassiophyllum ). On the basis of these results, we treat Thalassiophyllum as a syn onym of Agarum , reinstating the combination A. clathrus made by Greville in 1830. Despite its wide distribution from Japan through Alaska to the east coast of North America, A. clathratum had low genetic diversity, suggesting a relatively recent long‐distance dispersal of the species. The low degree of substitutions between A. clathratum and A. yakishiriense suggests their recent divergence from a common ancestor, and we recognize the latter as a subspecies of the former. Because type ma terial of A. clathratum has not been found, we designate as neotype a specimen collected in Kamchatka, one of two syntype localities cited by Gmelin for Fucus agarum.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.126
Threshold uncertainty score0.953

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.018
GPT teacher head0.170
Teacher spread0.151 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it