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Record W2912176519 · doi:10.1002/cbic.201900055

Cover Feature: A Bioluminescent Ca<sup>2+</sup> Indicator Based on a Topological Variant of GCaMP6s (ChemBioChem 4/2019)

2019· article· en· W2912176519 on OpenAlexaff
Yong Qian, Vladimir Rančić, Jiahui Wu, Klaus Ballanyi, Robert E. Campbell

Bibliographic record

VenueChemBioChem · 2019
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
Topicbioluminescence and chemiluminescence research
Canadian institutionsUniversity of Alberta
Fundersnot available
KeywordsBioluminescenceTopology (electrical circuits)ChromophoreLuciferaseCover (algebra)Fusion proteinChemistryResonance (particle physics)FusionPhysicsBiophysicsBiologyBiochemistryPhotochemistryGeneAtomic physicsRecombinant DNAMathematicsTransfection

Abstract

fetched live from OpenAlex

The cover feature picture shows how a change in the topology of an optimized genetically encoded Ca2+ indicator, GCaMP6s, led to a variant that retains the favorable properties of the original but also has new termini in closer proximity to the chromophore. Fusion of a bright luciferase to GCaMP6s (with the original topology) does not generate high bioluminescence resonance energy transfer (BRET) efficiency between the donor and acceptor either in the presence or absence of Ca2+. However, fusion of bright luciferase to the topological variant of GCaMP6s results in high BRET efficiency in the presence of Ca2+ and low BRET efficiency in its absence. This fusion protein is thus a highly effective glow-in-the-dark Ca2+ indicator. More information can be found in the communication by R. E. Campbell et al. on page 516 in Issue 4, 2019 (DOI: 10.1002/cbic.201800255). Image by Y.Q.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.025
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.248
Teacher spread0.240 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2019
Admission routes1
Has abstractyes

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