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Record W2914274777 · doi:10.1101/535443

<i>Saccharomyces cerevisiae</i> strains display robust phenotypes in the presence of Dyskeratosis congenita mutations in the <i>Cbf5</i> gene

2019· preprint· en· W2914274777 on OpenAlexaff
Abeer Abdullah Ogailan, Anne C. Rintala‐Dempsey, Ute Kothe

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2019
Typepreprint
Languageen
FieldMedicine
TopicTelomeres, Telomerase, and Senescence
Canadian institutionsUniversity of Lethbridge
Fundersnot available
KeywordsDyskeratosis congenitaRibosome biogenesisBiologyTelomeraseTelomerase RNA componentGeneticsPseudouridineRibonucleoproteinMutationGeneRNARibosomeCancer researchTelomerase reverse transcriptaseTransfer RNA

Abstract

fetched live from OpenAlex

Abstract Dyskeratosis congenita is a rare, congenital disorder affecting the skin, nails and oral mucosa of patients that often progresses to bone marrow failure and an increased predisposition for a variety of carcinomas. Mutations in the human dyskerin gene have been identified as the most prevalent cause of the disease. Dyskerin is a pseudouridine synthase and the catalytic subunit of H/ACA ribonucleoproteins (RNPs) responsible for the modification of uridines to pseudouridine in ribosomal RNA (rRNA), but dyskerin also binds to the telomerase RNA component (TERC). Accordingly, Dyskeratosis congenita mutations have been reported to affect both telomerase function as well as ribosome biogenesis, but the relative contribution of each pathway to the diseases is under debate. As the yeast homolog of dyskerin, Cbf5, does not interact with telomerase RNA, Saccharomyces cerevisiae is an ideal model to identify the selective impact of Dyskeratosis congenita mutations on ribosome biogenesis. Therefore, chromosomal mutations in the yeast homologue of dyskerin, Cbf5, were introduced at positions corresponding to the mutations in human dyskerin that result in Dyskeratosis congenita. To determine if the mutations affect cellular fitness, we screened for growth defects in yeast. Growth curves at different temperatures and yeast spot assays under several stress conditions revealed that the mutations in cbf5 did not impair growth compared to wild type. These findings suggest that in the yeast cell, Dyskeratosis congenita mutations do not significantly affect ribosome biogenesis, and we discuss the implications for understanding the molecular cause of Dyskeratosis congenita.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.007

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.001
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.022
GPT teacher head0.240
Teacher spread0.218 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2019
Admission routes1
Has abstractyes

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