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Record W2914410596 · doi:10.1107/s0108767318097155

Overexpression, purification of GSK3β and its interaction with an inhibitory fragment of the psychiatric risk protein DISC1

2018· article· en· W2914410596 on OpenAlexafffund
Narsimha Pujari, Stephanie Saundh, Steve Gagné, Sean Lipsit, Adelaine Kwun-Wai Leung

Bibliographic record

VenueActa Crystallographica Section A Foundations and Advances · 2018
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicPhosphodiesterase function and regulation
Canadian institutionsUniversity of Saskatchewan
FundersNatural Sciences and Engineering Research Council of CanadaSaskatchewan Health Research Foundation
KeywordsFragment (logic)Inhibitory postsynaptic potentialDISC1PsychiatryChemistryMedicineInternal medicineBiochemistryGeneComputer science

Abstract

fetched live from OpenAlex

Disrupted in Schizophrenia 1(DISC1) is a candidate risk gene in a number of major mental illnesses, e.g. depression, bipolar disorder and schizophrenia. DISC1 is a scaffold protein that interacts with a myriad of proteins, forming a large protein-protein-interaction network that coordinates various stages of brain development. Our lab is interested to understand how the structure of DISC1 facilitates its function in brain development. One of DISC1's interactors is the enzyme glycogen synthase kinase 3 (GSK-3). As a target for lithium, GSK3 is itself implicated in bipolar disorder. Through physical interactions, DISC1 inhibits GSK3 's function in the canonical Wnt/-catenin signalling pathway, which controls the proliferation of neural progenitors. The full length DISC1 protein is composed of 854 amino acids. The most potent GSK3 inhibitory region has been mapped to a short region in the N-terminus (residue 195-238). This 44 amino acid region (DISC1-44mer) can inhibit and bind GSK3 in in vitro experiments. To understand the mechanism of how DISC1 inhibits GSK3 , we are pursuing structural studies of GSK3 in complex with different truncations of DISC1. We will present our progress towards the structural studies of this important complex that is relevant to the pathophysiology of psychiatric diseases.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.007

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.006
GPT teacher head0.241
Teacher spread0.236 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2018
Admission routes2
Has abstractyes

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Same venueActa Crystallographica Section A Foundations and AdvancesSame topicPhosphodiesterase function and regulationFrench-language works237,207