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Record W2921951057 · doi:10.1093/jcag/gwz006.099

A100 THE ROLE OF EPS8 IN THE PATHOGENESIS OF PEDIATRIC INFLAMMATORY BOWEL DISEASE

2019· article· en· W2921951057 on OpenAlexaff
Kurt Z. Long, Q Li, Conghui Guo, Neil Warner, S Zhang, Jingyun Pan, Gabriella Leung, Vritika Batura, Aleixo M. Muise

Bibliographic record

VenueJournal of the Canadian Association of Gastroenterology · 2019
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicInflammatory Bowel Disease
Canadian institutionsHospital for Sick ChildrenUniversity of Toronto
Fundersnot available
KeywordsPathogenesisInflammatory bowel diseaseMutationImmunologyBiologyDiseasePathologyMedicineGeneticsGene

Abstract

fetched live from OpenAlex

The rate of onset for inflammatory bowel disease (IBD) is rising worldwide—most significantly in the pediatric population. The pathogenesis of the disease involves a complicated interaction between the environment and genetics. Recent findings suggest that there is a broad range of rare, single-gene mutations that correlated with the IBD phenotype in children. Some of these single-gene defects can disrupt the epithelial barrier, which alters intestinal immunity. Rare mutations in the Epidermal Growth Factor Receptor Substrate 8 (EPS8) gene has been reported in pediatric patients who presented with pancolitis, colonic strictures and other IBD-like symptoms. EPS8 has been shown to be involved in regulating actin polymerization; previously literature suggests that loss of EPS8 results in disruption of intestinal microvilli in C. Elegans and mice. The functional role of EPS8 in the pathogenesis of very early onset IBD remains elusive. We want to elucidate how a mutation in the EPS8 gene (I700T) affects the structure of a patient’s epithelial barrier. Ultimately, we want to clarify how the EPS8 variant contributes to the onset of pediatric IBD. We hypothesize that the EPS8 mutation will cause abberations in the actin structure of the patient’s intestinal epithelia. A pediatric patient with IBD was screened using whole exome sequencing (WES). Colon samples from the patient were collected and localization of EPS8 was visualized using immunofluorescence microscopy. Morphology of the intestinal microvilli will be assessed using transmission electron microscopy. Co-immunoprecipitation and immunoblot will be performed to evaluate the interaction of EPS8 signalling complex, which is involved in actin dynamics. WES data identified a patient with a homozygous recessive missense mutation in EPS8 (I700T), which was confirmed by Sanger sequencing. Immunofluorescence staining of the colonic sections revealed lower co-localization of EPS8 and beta-actin on the apical surfaces of epithelial cells, compared to IBD and normal controls. We predict that closer examination of the cell structure using electron microscopy will show disruption of the microvilli in the EPS8 mutant. Current findings suggest that the EPS8 mutant may disrupt microvilli actin organization in intestinal epithelial cells, which could contribute to the pathophysiology of pediatric IBD. Future experiments, such as intestinal organoid models, are necessary to confirm these results. CIHR

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.004
Threshold uncertainty score0.013

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0040.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.003
GPT teacher head0.184
Teacher spread0.181 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2019
Admission routes1
Has abstractyes

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