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Record W2936837693 · doi:10.5195/jmla.2019.519

A failed attempt at developing a search filter for systematic review methodology articles in Ovid Embase

2019· article· en· W2936837693 on OpenAlexaff
Christine Neilson, Mê‐Linh Lê

Bibliographic record

VenueJournal of the Medical Library Association JMLA · 2019
Typearticle
Languageen
FieldDecision Sciences
TopicMeta-analysis and systematic reviews
Canadian institutionsUniversity of Manitoba
Fundersnot available
KeywordsComputer scienceInformation retrievalFilter (signal processing)TerminologySearch engine indexingSystematic reviewSet (abstract data type)Plan (archaeology)Subject (documents)Data miningMEDLINEWorld Wide Web

Abstract

fetched live from OpenAlex

OBJECTIVES: This paper describes the development, execution, and subsequent failure of an attempt to create an Ovid Embase search filter for locating systematic review methodology articles. METHODS: The authors devised a work plan, based on best practices, for search filter development that has been outlined in the literature. Three reference samples were gathered by identifying the OVID Embase records for specific articles that were included in the PubMed Systematic Review Methods subset. The first sample was analyzed to develop a set of keywords and subject headings to include in the search filter. The second and third samples would have been used to calibrate the search filter and to calculate filter sensitivity and precision, respectively. RESULTS: Technical shortcomings, database indexing practices, and the fuzzy nature of keyword terminology relevant to the topic prevented us from designing the search filter. CONCLUSION: Creating a search filter to identify systematic review methodology articles in Ovid Embase is not possible at this time.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.628
metaresearch head score (Gemma)0.837
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesMetaresearch
DomainCandidate signal: Methods · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.372
Threshold uncertainty score0.458

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.6280.837
Meta-epidemiology (narrow)0.0030.005
Meta-epidemiology (broad)0.0080.008
Bibliometrics0.0510.031
Science and technology studies0.0070.004
Scholarly communication0.0140.013
Open science0.0070.009
Research integrity0.0070.005
Insufficient payload (model declined to judge)0.0050.004

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.652
GPT teacher head0.518
Teacher spread0.133 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; the direct Gemma label and the distilled Codex classifier agree on what is shown here.

Study designNot applicable
DomainMethods
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations8
Published2019
Admission routes1
Has abstractyes

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