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Record W2939306314 · doi:10.3389/fcimb.2019.00112

Dysbiosis of the Gut Microbiome in Lung Cancer

2019· article· en· W2939306314 on OpenAlexaff
He Zhuang, Liang Cheng, Yao Wang, Yukun Zhang, Man-Fei Zhao, Gong-Da Liang, Meng‐Chun Zhang, Yongguo Li, Jingbo Zhao, Yina Gao, Yujie Zhou, Shu‐Lin Liu

Bibliographic record

VenueFrontiers in Cellular and Infection Microbiology · 2019
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGut microbiota and health
Canadian institutionsUniversity of Calgary
Fundersnot available
KeywordsDysbiosisMicrobiomeActinobacteriaBifidobacteriumBiologyGut floraLung cancerPhylumCancerPathogenesisColorectal cancerImmunologyMicrobiologyMedicineInternal medicineBacteria16S ribosomal RNABioinformaticsGeneticsLactobacillus

Abstract

fetched live from OpenAlex

Dear Editor: We wish to submit a manuscript entitled “Dysbiosis of the gut microbiome in lung cancer ” to Frontiers in Cellular and Infection Microbiology, Microbiome in Health and Disease section, for your consideration to publish as a Research Article. In this study, we examined the gut microbiome between 30 lung cancer patients and 30 healthy controls via next generation sequencing of 16S rDNA to uncover potential biomarkers for early diagnosis and targeted intervention. Previous analyses of the microbe-lung cancer relationship have been focused on lung microbiome. To our knowledge, this is the first study of lung cancer from the perspective of gut microbiome. Our findings support the hypothesis of an lung cancer-specific compositional structure of gut bacterial populations. Our work suggests that the dysbiosis of the gut microbiome in lung cancer as reflected by reduced abundance of Actinobacteria and Bifidobacterium and elevated levels of Enterococcus had facilitated the development of lung cancer and may help develop novel strategies for early prevention and targeted intervention against lung cancer. The authors claim that none of the materials in the paper has been published or is under consideration for publication elsewhere. Thank you very much for your consideration and we look forward to hearing from you soon. Yours Sincerely He Zhuang and Shu-Lin Liu Genomics Research Center Harbin Medical University 157 Baojian Road Harbin, 150081 China

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.006
metaresearch head score (Gemma)0.029
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.008
Threshold uncertainty score0.033

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0060.029
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0020.001
Bibliometrics0.0010.001
Science and technology studies0.0010.002
Scholarly communication0.0040.003
Open science0.0020.001
Research integrity0.0080.011
Insufficient payload (model declined to judge)0.0040.003

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.003
GPT teacher head0.220
Teacher spread0.217 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations244
Published2019
Admission routes1
Has abstractyes

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