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Record W2939528010 · doi:10.1371/journal.pbio.3000188

Exact replication: Foundation of science or game of chance?

2019· article· en· W2939528010 on OpenAlexaff
Sophie K. Piper, Ulrike Grittner, André Rex, Nico Riedel, Felix Fischer, Robert Nadon, Bob Siegerink, Ulrich Dirnagl

Bibliographic record

VenuePLoS Biology · 2019
Typearticle
Languageen
FieldVeterinary
TopicAnimal testing and alternatives
Canadian institutionsMcGill UniversityMcGill University and Génome Québec Innovation Centre
Fundersnot available
KeywordsReplication (statistics)Sample size determinationBiologyStatistical powerStatistical hypothesis testingSample (material)Computer scienceMeta-analysisBayesian probabilityStatisticsArtificial intelligenceMathematicsMedicinePhysics

Abstract

fetched live from OpenAlex

The need for replication of initial results has been rediscovered only recently in many fields of research. In preclinical biomedical research, it is common practice to conduct exact replications with the same sample sizes as those used in the initial experiments. Such replication attempts, however, have lower probability of replication than is generally appreciated. Indeed, in the common scenario of an effect just reaching statistical significance, the statistical power of the replication experiment assuming the same effect size is approximately 50%-in essence, a coin toss. Accordingly, we use the provocative analogy of "replicating" a neuroprotective drug animal study with a coin flip to highlight the need for larger sample sizes in replication experiments. Additionally, we provide detailed background for the probability of obtaining a significant p value in a replication experiment and discuss the variability of p values as well as pitfalls of simple binary significance testing in both initial preclinical experiments and replication studies with small sample sizes. We conclude that power analysis for determining the sample size for a replication study is obligatory within the currently dominant hypothesis testing framework. Moreover, publications should include effect size point estimates and corresponding measures of precision, e.g., confidence intervals, to allow readers to assess the magnitude and direction of reported effects and to potentially combine the results of initial and replication study later through Bayesian or meta-analytic approaches.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.297
metaresearch head score (Gemma)0.532
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesMetaresearch
DomainCandidate signal: Reproducibility · Consensus signal: none
Study designCandidate signal: Theoretical or conceptual · Consensus signal: Theoretical or conceptual
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.703
Threshold uncertainty score0.866

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.2970.532
Meta-epidemiology (narrow)0.0020.002
Meta-epidemiology (broad)0.0070.004
Bibliometrics0.0040.003
Science and technology studies0.0030.041
Scholarly communication0.0080.020
Open science0.0060.009
Research integrity0.0100.012
Insufficient payload (model declined to judge)0.0140.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.239
GPT teacher head0.435
Teacher spread0.196 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; the direct Gemma label and the distilled Codex classifier agree on what is shown here.

Study designTheoretical or conceptual
DomainReproducibility
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations32
Published2019
Admission routes1
Has abstractyes

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