The effect of methylation on the intrinsic photophysical properties of simple rhodamines
Bibliographic record
Abstract
The rational design of rhodamines and other fluorescent probes for different functions would benefit from an improved understanding of their photophysics. Key photophysical properties, including fluorescence, depend on the outcome of competing pathways for intra- and intermolecular energy flow within and from excited state molecules. In the work reported here, we simplify this complex landscape by eliminating solvent interactions, revealing intrinsic photophysical effects of systematic structural changes. Selected-ion laser-induced fluorescence (SILIF) is used to examine the effects of stepwise N-methylation on a rhodamine scaffold, starting with the simple rhodamine 123, in the gas phase. Fluorescence excitation and emission spectra together with fluorescence lifetime measurements are reported and discussed. While the systematic decrease in gas-phase 0-0 transition energy by 500 cm-1 per methylation is in line with expectations from solution studies, other trends are observed that are not apparent in solution studies. These include a notable narrowing of spectral profiles, three-fold decrease in Stokes shift and an ∼three-fold increase in brightness as the number of N-methylations rises from zero to four. Most surprising, while rhodamine 123 displays the expected textbook mirror-image symmetry between excitation and emission spectra, the emission spectrum of its tetra N-methylated derivative is ∼30% broader than the excitation spectrum. The likelihood that this difference reflects emission prior to complete vibrational redistribution of energy within the excited state of the larger rhodamines is discussed. This suggestion goes against conventional wisdom about the timescale of energy redistribution within molecules of this size, an understanding which was developed from solution studies. Overall, this study furthers our understanding of energy flow within an important class of fluorophores, highlights the consequences of energy flow between fluorophores and surrounding solvent, and provides benchmark experimental data for solvent-free chromophores to assist and calibrate computational work.
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How this classification was reachedexpand
Full frame distilled prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.
Codex and Gemma teacher scores by category
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.000 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.000 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one teacher head, not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".