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Record W2942842763 · doi:10.5539/jas.v11n6p373

Genetic Diversity and Fine-Scale Genetic Structure in Syagrus oleracea (Mart.) Becc.: A Survivor Palm Species of the Semiarid

2019· article· en· W2942842763 on OpenAlexvenueno aff
Luciana Rodrigues de Souza, Helbert Fagundes Soares, Sara Luiza Ramos Ribeiro, Afrânio Farias de Melo, Murilo Malveira Brandão, Elytânia Veiga Menezes, Vanessa de Andrade Royo, Dario Alves de Oliveira

Bibliographic record

VenueJournal of Agricultural Science · 2019
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic diversity and population structure
Canadian institutionsnot available
FundersFundação de Amparo à Pesquisa do Estado de Minas GeraisUniversidade Estadual de Montes Claros
KeywordsGenetic diversityLoss of heterozygosityBiologyAlleleDiversity indexGene flowGenetic variationEvolutionary biologyBotanyEcologyGeneticsSpecies richnessPopulationGeneDemography

Abstract

fetched live from OpenAlex

The species Syagrus oleracea is a native palm tree, present in highly impacted environments of the Brazilian semiarid. This species is exploited for use in the manufacture of folk crafts and for human and animal feeding. The objective of this study was to characterize the diversity and genetic structure of individuals from different populations, located in anthropic regions of the Brazilian semiarid region, in the state of Minas Gerais. This information is important for species management and conservation strategies. Thus, we used ISSR molecular markers in 157 individuals in seven populations of S. oleracea. Looking at the results, one can observe that amplifications of 109 locos occurred and that an average of 18, 17 alleles were found on each primer, values that demonstrated that the ISSR technique used was highly efficient. The genetic diversity indexes were observed, showing expected heterozygosity (He) and Shannon index (I) of 0.260 and 0.383, respectively. The number of alleles observed (na) among populations was 1.954 and the effective number of alleles (ne) was 1,606. Individuals of the populations are genetically structured in groups (demes) in a random and aggregate manner. We obtained the amplification of 109 ISSR loci, with a mean of 18.2 alleles per primer. The genetic diversity indexes revealed expected heterozygosity (He) and Shannon index (I) of 0.260 and 0.383, respectively. The number of alleles observed (na) was 1.954 and the effective number of alleles (ne) was 1.606. The value of the indirect gene flow found was 1.546. Evidence of high levels of kinship in populations was found, possibly due to low migration rates and geographical barrier. In addition, we observed signs of overexploitation in the areas, which consequently leads to a low rate of gene flow, occurring inbreeding among the sampled populations of Syagrus oleracea.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.004
Threshold uncertainty score0.008

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.006
GPT teacher head0.186
Teacher spread0.180 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2019
Admission routes1
Has abstractyes

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