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Record W2943431893

Molecular basis of calcicole-calcifuge physiology

2008· dissertation· en· W2943431893 on OpenAlexaboutno aff
Sunil Choudhary Cherukuri

Bibliographic record

VenueLancaster EPrints (Lancaster University) · 2008
Typedissertation
Languageen
FieldAgricultural and Biological Sciences
TopicAluminum toxicity and tolerance in plants and animals
Canadian institutionsnot available
Fundersnot available
KeywordsEcotypeTrichomeBiologyCalcareousRoot hairNutrientBotanyArabidopsis thalianaCalcareous soilsSoil waterAdaptation (eye)EcologyGeneMutantBiochemistry
DOInot available

Abstract

fetched live from OpenAlex

Calcium (Ca2+) is an essential plant nutrient that plays a key role in plant growth and development and an essential second messenger that controls a variety of cellular functions. It also plays a role in cellular regulation of plant cell signaling. Plants rely on the unique properties of Ca2+ for a range of structural, enzymatic, and signaling functions. Of the many nutrients essential for normal growth and development of plants, Ca2+ occupies a unique position both chemically and functionally. Soils vary widely in their Ca2+ content and therefore, adaptations shown by plants, mainly to this factor, have led to the emergence of two very distinct ecological divisions termed as calcicoles (grow on calcareous soils) and calcifuges (grow on acidic soils). As excess Ca2+ is toxic to plants the sequestering of incoming Ca2+ as Ca2+ oxalate in epidermal trichomes has been studied in calcicoles from high Ca2+ enriched environments (calcareous soils). However, much less is known about the molecular basis of adaptation to this ecological phenomenon as well as the morphological adaptation patterns of calcicoles and calcifuges in response to varied levels of rhizospheric Ca2+. In this study, six ecotypes of A. thaliana, comprising two putative wild calcifuges (Glenisla and Penicuik), two putative wild calcicoles (Halifax and Elland) collected from varyingly calcareous regions around UK, and two lab grown ecotypes (Col-4 and Cal-0) were subjected to varied concentrations of Ca2+ stress under invitro conditions and a difference in growth and morphology of these ecotypes was measured. Also, DNA microarray analysis was utilized to detect genes that are regulated by Ca2+. A differed pattern in the root growth was observed in all the ecotypes at varied external Ca2+ application ranging from 0 mM to 30 mM. The primary root structure and growth differed markedly in Glenisla plants grown at 30 mM Ca2+. TUNEL assay determined the occurrence of apoptosis in the same Glenisla roots. Also, ten repressed Calcium-responsive genes in Cal-0 (Cal-CRGs) at high Ca2+ were investigated in all the six ecotypes using Real time RT-PCR, demonstrating their differed expression patterns in putative calcicoles to putative calcifuges. Analysis of SALK T-DNA knockout Cal-CRG5 and Cal-CRG17 lines, revealed the potential role of repression of these genes in rhizospheric Ca2+ tolerance.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.857
Threshold uncertainty score0.999

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.017
GPT teacher head0.199
Teacher spread0.182 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2008
Admission routes1
Has abstractyes

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