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Record W2945133581 · doi:10.1080/23802359.2019.1614891

The complete mitochondrial and plastid genomes of <i>Corallina chilensis</i> (Corallinaceae, Rhodophyta) from Tomales Bay, California, USA

2019· article· en· W2945133581 on OpenAlex
Ivan A. Alejo, Teresa E. Aleman, Karina Almanza, William Alonso, Maria Guadalupe Altamirano Manriquez, Tyler Armbrister, Yoshio Astudillo, Lyric Batistiana, Jonathan S. Blas Guido, Danilo E. Bustamante, Martha S. Calderón, Jovany D. Camacho Gonzalez, Suiry Cardoso, José Marcos de Castro, Maria N. Chombo Garcia, Lissa P. Colin, Karina G. Cortina, Andrea Delgado, Daniel Espinoza Castro, Isabel Estrada, Eduardo Felix, Stephanie Felix, Martin Flores, Suzanne Frausto, Eli D. Garcia, Malia Garcia, Gabriela Gasca, Daniela Gómez, Christian Gonzalez Balcazar, Bianca G. Miramontes, Víctor M González, Clarissa D. Guzman, Edgard C. Guzman, Timothy B. Hanneman, Julissa M. Hernandez, Jeffery R. Hughey, Victoria N. Hutchins, Eli R. Kallison, Sebastian Lepe, Serena M. Lopez, Feifei Zhai Lorenzo, Evelyn Macias Reyes, Fernando Martínez Madrigal, Nayeli G. Madrigal-Gonzalez, Rodolfo Mandujano, Ricardo M. Manzo, Paloma L. Martinez, Sergio Martı́nez, Bianey A. Medina, Mario F. Mendez, Jose J. Mendoza Contreras, Ana I. Meza, Kevin Miller, Anna Deeny Morales, Eduardo Muñoz, Johnna M. Myers, Priya-Anjali Patel, Dominic Pina Montes, Alejandra N. Ponce, Alicia E. Ramirez, Elías Rico, Aide Rodriguez, Jasmine Rodriguez, Ángel Ruíz, Andrea Saldana, Angélica Gutiérrez-Sánchez, Jessica D. Santana, Francisco D. Solano, Alejandra Soto Trujillo, Sarai J. Soto, Alicia Steinhardt, Melisa Talavera, Monik M. Tapia, Odalis Tapia, Maria O. Taveras Dina, Brenda J. Torresillas, Clarissa Vazquez-Ramos, Frances Wong

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

aboutThe title or abstract carries a Canadian signal from the geographic lexicon.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueMitochondrial DNA Part B · 2019
Typearticle
Languageen
FieldEarth and Planetary Sciences
TopicMarine and coastal plant biology
Canadian institutionsnot available
Fundersnot available
KeywordsBiologyPlastidGenBankBayGenomeMitochondrial DNASyntenyEvolutionary biologyGeneBotanyGeneticsChloroplastOceanography

Abstract

fetched live from OpenAlex

Genomic analysis of the marine alga Corallina chilensis from Tomales Bay, California, USA, resulted in the assembly of its complete mitogenome (GenBank accession number MK598844) and plastid genome (GenBank MK598845). The mitogenome is 25,895 bp in length and contains 50 genes. The plastid genome is 178,350 bp and contains 233 genes. The organellar genomes share a high-level of gene synteny to other Corallinales. Comparison of rbcL and cox1 gene sequences of C. chilensis from Tomales Bay reveals it is identical to three specimens from British Columbia, Canada and very similar to a specimen of C. chilensis from southern California. These genetic data confirm that C. chilensis is distributed in Pacific North America.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesInsufficient payload (model declined to judge)
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.807
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.015
GPT teacher head0.194
Teacher spread0.179 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it