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Record W2945133581 · doi:10.1080/23802359.2019.1614891

The complete mitochondrial and plastid genomes of <i>Corallina chilensis</i> (Corallinaceae, Rhodophyta) from Tomales Bay, California, USA

2019· article· en· W2945133581 on OpenAlexaboutno aff
Ivan A. Alejo, Teresa E. Aleman, Karina Almanza, William Alonso, Maria Guadalupe Altamirano Manriquez, Tyler Armbrister, Yoshio Astudillo, Lyric Batistiana, Jonathan S. Blas Guido, Danilo E. Bustamante, Martha S. Calderón, Jovany D. Camacho Gonzalez, Suiry Cardoso, José Marcos de Castro, Maria N. Chombo Garcia, Lissa P. Colin, Karina G. Cortina, Andrea Delgado, Daniel Espinoza Castro, Isabel Estrada, Eduardo Felix, Stephanie Felix, Martin Flores, Suzanne Frausto, Eli D. Garcia, Malia Garcia, Gabriela Gasca, Daniela Gómez, Christian Gonzalez Balcazar, Bianca G. Miramontes, Víctor M González, Clarissa D. Guzman, Edgard C. Guzman, Timothy B. Hanneman, Julissa M. Hernandez, Jeffery R. Hughey, Victoria N. Hutchins, Eli R. Kallison, Sebastian Lepe, Serena M. Lopez, Feifei Zhai Lorenzo, Evelyn Macias Reyes, Fernando Martínez Madrigal, Nayeli G. Madrigal-Gonzalez, Rodolfo Mandujano, Ricardo M. Manzo, Paloma L. Martinez, Sergio Martı́nez, Bianey A. Medina, Mario F. Mendez, Jose J. Mendoza Contreras, Ana I. Meza, Kevin Miller, Anna Deeny Morales, Eduardo Muñoz, Johnna M. Myers, Priya-Anjali Patel, Dominic Pina Montes, Alejandra N. Ponce, Alicia E. Ramirez, Elías Rico, Aide Rodriguez, Jasmine Rodriguez, Ángel Ruíz, Andrea Saldana, Angélica Gutiérrez-Sánchez, Jessica D. Santana, Francisco D. Solano, Alejandra Soto Trujillo, Sarai J. Soto, Alicia Steinhardt, Melisa Talavera, Monik M. Tapia, Odalis Tapia, Maria O. Taveras Dina, Brenda J. Torresillas, Clarissa Vazquez-Ramos, Frances Wong

Bibliographic record

VenueMitochondrial DNA Part B · 2019
Typearticle
Languageen
FieldEarth and Planetary Sciences
TopicMarine and coastal plant biology
Canadian institutionsnot available
Fundersnot available
KeywordsBiologyPlastidGenBankBayGenomeMitochondrial DNASyntenyEvolutionary biologyGeneBotanyGeneticsChloroplastOceanography

Abstract

fetched live from OpenAlex

Genomic analysis of the marine alga Corallina chilensis from Tomales Bay, California, USA, resulted in the assembly of its complete mitogenome (GenBank accession number MK598844) and plastid genome (GenBank MK598845). The mitogenome is 25,895 bp in length and contains 50 genes. The plastid genome is 178,350 bp and contains 233 genes. The organellar genomes share a high-level of gene synteny to other Corallinales. Comparison of rbcL and cox1 gene sequences of C. chilensis from Tomales Bay reveals it is identical to three specimens from British Columbia, Canada and very similar to a specimen of C. chilensis from southern California. These genetic data confirm that C. chilensis is distributed in Pacific North America.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.043
Threshold uncertainty score0.085

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.002
Science and technology studies0.0010.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.015
GPT teacher head0.194
Teacher spread0.179 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations4
Published2019
Admission routes1
Has abstractyes

Explore more

Same venueMitochondrial DNA Part BSame topicMarine and coastal plant biologyFrench-language works237,207