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Record W2950212998 · doi:10.1080/07060661.2019.1631215

Occurrence and geographic distribution of <i>Squash leaf curl virus</i> in the Baja California Peninsula, Mexico

2019· article· en· W2950212998 on OpenAlexvenueno aff
Mayela Vargas-Salinas, Diana Medina-Hernández, Omar Aranda-López, Ricardo Hernández-Barrera, Ramón Jaime Holguín-Peña

Bibliographic record

VenueCanadian Journal of Plant Pathology · 2019
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicPlant Virus Research Studies
Canadian institutionsnot available
FundersNational Eye InstituteConsejo Nacional de Ciencia y TecnologíaNorthwestern University
KeywordsSquashLeaf curlBiologyBegomovirusCladePhylogenetic treeWhiteflyVeterinary medicinePlant virusBotanyVirusVirologyGeneticsGene

Abstract

fetched live from OpenAlex

Squash leaf curl (SLC) disease causes serious damage in a great diversity of horticultural crops worldwide and is due to infection by different ssDNA bipartite begomoviruses (Family Geminiviridae). Symptoms of leaf yellowing, stunting and curling have been observed in squash crops in the southern region of the Baja California (BC) Peninsula in the northwestern region of Mexico for at least a decade. The damage estimated for all localities showed disease incidence of 73.3% to 97.7% and severity of 49%. Infected plants were collected in three localities in addition to adult whiteflies for species determination. Squash leaf curl virus (SLCuV) was detected in both infected plants and whiteflies by PCR using specific primers that amplified a 601 bp fragment. The full-length DNA-A sequence was 99.1% identical to sequences in GenBank. Phylogenetic studies using the core CP region showed that the BC isolate grouped within a well-defined clade together with SLCuV from the Mediterranean Middle East and USA. The molecular analysis in individual adult whiteflies determined that all populations belonged to Bemisia tabaci (MEAM1) (biotype B) species. No evidence of the Mediterranean (MED) species (biotype Q) was found. The SLC disease has prevailed in squash in the region in several growing cycles and in geographically separated localities. To the best of our knowledge, this is the first report of SLCuV associated with squash plants in BCS, Mexico.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.163
Threshold uncertainty score0.324

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.017
GPT teacher head0.216
Teacher spread0.199 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations6
Published2019
Admission routes1
Has abstractyes

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