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Record W2951649327 · doi:10.2174/157019309789371659

Intrinsically Fluorescent Base-Discriminating Nucleoside Analogs

2009· article· en· W2951649327 on OpenAlexaff
D. Dodd, Robert H. E. Hudson

Bibliographic record

VenueMini-Reviews in Organic Chemistry · 2009
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicDNA and Nucleic Acid Chemistry
Canadian institutionsWestern University
Fundersnot available
KeywordsFluorophoreNucleic acidComputational biologyDNANucleosideFluorescenceAptamerRibozymeChemistryBiologyCombinatorial chemistryBiochemistryGeneticsRNAGenePhysics

Abstract

fetched live from OpenAlex

Modified nucleosides possessing intrinsically fluorescent heterocycles as base surrogates that are capable of canonical basepairing are becoming important biomolecular tools. These “base-discriminating fluorophores” (BDFs) find use in hybridization-based mismatch detection, elucidation of DNA damage and the study of localized structural phenomena as exemplified in the study of ribozymes and nucleic acid/ligand interactions. In this review, an historical perspective will be given along with some of the more recent highlights in this rapidly developing field. Keywords: Base-discriminating fluorophore, SNP, DNA, luminescence, solvatochromatism

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow), Insufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.092
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.247
Teacher spread0.237 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations106
Published2009
Admission routes1
Has abstractyes

Explore more

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