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Record W2952651124 · doi:10.1145/3331156

Tangible BioNets

2019· article· en· W2952651124 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.
fundA Canadian funder is recorded on the work.

Bibliographic record

VenueProceedings of the ACM on Human-Computer Interaction · 2019
Typearticle
Languageen
FieldComputer Science
TopicData Visualization and Analytics
Canadian institutionsYork UniversityToronto Metropolitan University
FundersNatural Sciences and Engineering Research Council of CanadaCanada Excellence Research Chairs, Government of CanadaCanada Foundation for InnovationOntario Ministry of Research, Innovation and ScienceCanada Research ChairsNational Science Foundation
KeywordsComputer scienceUsabilityProcess (computing)Biological networkHuman–computer interactionBiological dataData scienceBioinformatics

Abstract

fetched live from OpenAlex

Biological networks analysis has become a systematic and large-scale phenomenon. Most biological systems are often difficult to interpret due to the complexity of relationships and structural features. Moreover, existing primarily web-based interfaces for biological networks analysis often have limitations in usability as well as in supporting high-level reasoning and collaboration. Interactive surfaces coupled with tangible interactions offer opportunities to improve the comparison and analysis of large biological networks, which can aid researchers in making hypotheses and forming insights. We present Tangible BioNets, an active tangible and multi-surface system that allows users with diverse expertise to explore and understand the structural and functional aspects of biological organisms individually or collaboratively. The system was designed through an iterative co-design process and facilitates the exploration of biological network topology, catalyzing the generation of new insights. We describe a first informal evaluation with expert users and discuss considerations for designing tangible and multi-surface systems for large biological datasets.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Theoretical or conceptual · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.630
Threshold uncertainty score0.463

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.001
Open science0.0020.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.045
GPT teacher head0.333
Teacher spread0.287 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it