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Record W2963437980 · doi:10.1101/712265

Divulging diazotrophic bacterial community structure in Kuwait desert ecosystems and their N2-fixation potential

2019· preprint· en· W2963437980 on OpenAlexfundno aff
M. K. Suleiman, Ali M. Quoreshi, N. R. Bhat, Anitha J. Manuvel, Mini T. Sivadasan

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2019
Typepreprint
Languageen
FieldAgricultural and Biological Sciences
TopicLegume Nitrogen Fixing Symbiosis
Canadian institutionsnot available
FundersKuwait Institute for Scientific ResearchUniversité de SherbrookeUniversité Laval
KeywordsNitrogen fixationDiazotrophBiologyEcosystemBotanyRoot noduleRhizosphereRhizobiumBacteriaEcology

Abstract

fetched live from OpenAlex

Abstract Kuwait is a semi-arid region with harsh climatic conditions with poor available soil nutrient essential for the growth of plants. Kuwait’s ecosystem is relatively N-poor ecosystem when compared to the other ecosystems. Biological nitrogen fixation (BNF) is a spontaneous process in which diazotrophic bacteria fixes the atmospheric nitrogen directly in to the bionetwork. At present, there is limited information on free-living and root associated nitrogen-fixing bacteria, their potential to fix nitrogen to aid natural plant communities in the desert of Kuwait. In this study, free-living N 2 -fixing bacteria were enriched and isolated from the rhizospheric soil of three keystone native plant species of Kuwait; such as Rhanterium epapposum, Farsetia aegyptia , and Haloxylon salicornicum . Root associated bacteria were directly isolated from the root nodules of Vachellia pachyceras . In this study, a number of free-living and root associated dizotrophs were isolated from various rhizospheric soils of three native shrubs and root nodules from one tree species. The screened isolates were assessed for nitrogen-fixing ability and identified using Acetylene Reduction Assay (ARA) and 16s rRNA gene sequencing, respectively. Our study successfully identified all the 50 nitrogen-fixers isolated initially and out of that, 78% were confirmed as nitrogen-fixers using ARA. Among the identified nitrogen fixers, the genus Rhizobium is dominant in rhizospheric soil of Rhanterium epapposum , whereas Pseudomonas and Rhizobium are dominant in the rhizospheric soil of Farsetia aegyptia , and Haloxylon salicornicum respectively. The species Agrobacterium tumefaciens is found dominant in the root nodules of V. pachyceras . The current results indicate that plant species and their rhizospheric effects are important drivers for specificity of microbial diversity in arid soils. To our knowledge, this study is the first investigation of culture-based isolation, molecular identification, and evaluation of N 2 -fixing ability of diazotrophs from Kuwait desert environment.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.017
Threshold uncertainty score0.033

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0010.000
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.012
GPT teacher head0.184
Teacher spread0.173 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations4
Published2019
Admission routes1
Has abstractyes

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