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Record W2970379806 · doi:10.1038/s41467-019-11862-x

The molecular origin and taxonomy of mucinous ovarian carcinoma

2019· article· en· W2970379806 on OpenAlexafffund
Dane Cheasley, Matthew J. Wakefield, Georgina L. Ryland, Prue E. Allan, Kathryn Alsop, Kaushalya Amarasinghe, Sumitra Ananda, Michael S. Anglesio, George Au‐Yeung, Maret Böhm, David D.L. Bowtell, Alison H. Brand, Georgia Chenevix‐Trench, Michael Christie, Yoke-Eng Chiew, Michael Churchman, Anna DeFazio, Renee Demeo, Rhiannon Dudley, Nicole Fairweather, Clare G. Fedele, Sián Fereday, Stephen B. Fox, C. Blake Gilks, Charlie Gourley, Neville F. Hacker, Alison Hadley, Joy Hendley, Gwo‐Yaw Ho, Siobhan Hughes, David G. Hunstman, Sally M. Hunter, Tom Jobling, Kimberly R. Kalli, Scott H. Kaufmann, Catherine J. Kennedy, Martin Köbel, Cécile Le Page, Jason Li, Richard Lupat, Orla McNally, Jessica N. McAlpine, Anne‐Marie Mes‐Masson, Linda Mileshkin, Diane Provencher, Jan Pyman, Kurosh Rahimi, Simone M. Rowley, Carolina Salazar, Goli Samimi, Hugo Saunders, Timothy Semple, R. Sharma, Alice J. Sharpe, Andrew N. Stephens, Niko Thio, Michelle C. Torres, Nadia Traficante, Zhongyue Xing, Magnus Zethoven, Yoland Antill, Clare L. Scott, Ian Campbell, Kylie L. Gorringe

Bibliographic record

VenueNature Communications · 2019
Typearticle
Languageen
FieldMedicine
TopicOvarian cancer diagnosis and treatment
Canadian institutionsUniversité de MontréalUniversity of CalgaryCentre Hospitalier de l’Université de MontréalUniversity of British Columbia
FundersMedical Research and Materiel CommandCancer Council TasmaniaNational Institutes of HealthBC Cancer FoundationUniversité de MontréalCancer Council South AustraliaMedical Research CouncilPeter MacCallum FoundationTerry Fox Research InstitutePeter MacCallum Cancer CentreCancer Council VictoriaCancer AustraliaAustralian Cancer Research FoundationCancer Council NSWNational Health and Medical Research CouncilMinnesota Ovarian Cancer AllianceVGH and UBC Hospital FoundationCancer Institute NSWFred C. and Katherine B. Andersen FoundationNational Cancer InstituteOvarian Cancer AustraliaMayo Foundation for Medical Education and Research
KeywordsOvaryOvarian cancerOvarian carcinomaAmpliconBiologyPathologyCancer researchDiseaseOncologyCancerMedicineGeneGeneticsPolymerase chain reaction

Abstract

fetched live from OpenAlex

Mucinous ovarian carcinoma (MOC) is a unique subtype of ovarian cancer with an uncertain etiology, including whether it genuinely arises at the ovary or is metastatic disease from other organs. In addition, the molecular drivers of invasive progression, high-grade and metastatic disease are poorly defined. We perform genetic analysis of MOC across all histological grades, including benign and borderline mucinous ovarian tumors, and compare these to tumors from other potential extra-ovarian sites of origin. Here we show that MOC is distinct from tumors from other sites and supports a progressive model of evolution from borderline precursors to high-grade invasive MOC. Key drivers of progression identified are TP53 mutation and copy number aberrations, including a notable amplicon on 9p13. High copy number aberration burden is associated with worse prognosis in MOC. Our data conclusively demonstrate that MOC arise from benign and borderline precursors at the ovary and are not extra-ovarian metastases.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.547
Threshold uncertainty score0.188

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.022
GPT teacher head0.291
Teacher spread0.269 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations187
Published2019
Admission routes2
Has abstractyes

Explore more

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