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Record W2972317394 · doi:10.1002/jimd.12173

The first European guidelines on phenylketonuria: Usefulness and implications for BH<sub>4</sub> responsiveness testing

2019· article· en· W2972317394 on OpenAlexfundno aff
Roeland A. F. Evers, Annemiek M. J. van Wegberg, Karen Anjema, Charlotte M. A. Lubout, Esther van Dam, Danique van Vliet, Nenad Blau, Francjan J. van Spronsen

Bibliographic record

VenueJournal of Inherited Metabolic Disease · 2019
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicMetabolism and Genetic Disorders
Canadian institutionsnot available
FundersNutricia Research FoundationStichting MetakidsRare Disease FoundationNational PKU AllianceVitafloSwedish Orphan BiovitrumModernaBioMarin PharmaceuticalAlexion Pharmaceuticals
KeywordsHuman geneticsMedicinePhenylketonuriasGenetic testingPediatricsMEDLINEGeneticsBiologyInternal medicinePhenylalanineBiochemistry

Abstract

fetched live from OpenAlex

Abstract Objective This study aimed to investigate and improve the usefulness of the 48‐hour BH 4 loading test and to assess genotype for BH 4 responsiveness prediction, using the new definition of BH 4 responsiveness from the European guidelines, as well as an amended definition. Method Applying the definition of the European guidelines (≥100% increase in natural protein tolerance) and an amended definition (≥100% increase in natural protein tolerance or tolerating a safe natural protein intake) to a previous dataset, we first assessed the positive predictive value (PPV) of the 48‐hour BH 4 loading test using a cutoff value of 30%. Then, we tried to improve this PPV by using different cutoff values and separate time points. Last, using the BIOPKU database, we compared predicted BH 4 responsiveness (according to genotype) and genotypic phenotype values (GPVs) in BH 4 ‐responsive and BH 4 ‐unresponsive patients. Results The PPV of the 48‐hour loading test was 50.0% using the definition of the European guidelines, and 69.4% when applying the amended definition of BH 4 responsiveness. Higher cutoff values led to a higher PPV, but resulted in an increase in false‐negative tests. Parameters for genotype overlapped between BH 4 ‐responsive and BH 4 ‐unresponsive patients, although BH 4 responsiveness was not observed in patients with a GPV below 2.4. Conclusion The 48‐hour BH 4 loading test is not as useful as previously considered and cannot be improved easily, whereas genotype seems mainly helpful in excluding BH 4 responsiveness. Overall, the definition of BH 4 responsiveness and BH 4 responsiveness testing require further attention.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.647
Threshold uncertainty score0.546

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.029
GPT teacher head0.279
Teacher spread0.250 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations23
Published2019
Admission routes1
Has abstractyes

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