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Record W2973923464 · doi:10.1080/07060661.2019.1669076

Characterization and mapping of stem rust resistance in McNair 701 winter wheat

2019· article· en· W2973923464 on OpenAlexafffundvenue
Jyoti Saini Sharma, T. Fetch, Colin W. Hiebert

Bibliographic record

VenueCanadian Journal of Plant Pathology · 2019
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicWheat and Barley Genetics and Pathology
Canadian institutionsAgriculture and Agri-Food Canada
FundersWestern Grains Research FoundationManitoba Agriculture, Food and Rural DevelopmentGenome Canada
KeywordsStem rustResistance (ecology)Rust (programming language)Winter wheatBiologyAgronomyComputer science

Abstract

fetched live from OpenAlex

Wheat stem rust, caused by the fungal pathogen Puccinia graminis f. sp. tritici (Pgt), has re-emerged as an important disease of wheat. This pathogen continues to spread and evolve new virulent races. The international letter-code system of nomenclature has been used to pathotype these new emerging races, and gene SrMcN from ‘McNair 701' winter wheat, which is one of the differential lines, was examined in this study. The chromosome and map position of gene SrMcN have not been determined, and thus the objective of this research was to genetically map SrMcN. A doubled haploid population (n = 186) was made from the cross 'LMPG'/'McNair 701' and inoculated with Pgt race QCCJB. The DH population segregated 95 resistant : 91 susceptible lines, which fitted the expected 1 : 1 ratio (χ2 = 0.09, P = 0.77, NS) for a single gene. SrMcN mapped to chromosome 2DL using the 90K iSelect wheat SNP array, and Kompetitive allele specific (KASP) polymerase chain reaction markers located SrMcN to the same position as Sr54 previously found in ‘Norin 40'. Comparison of stem rust seedling reactions using 12 diverse Pgt races indicated that SrMcN and Sr54 had an identical pattern of responses and similar low infection types (from ; to 2−) to races LBBLB, LCBNB and QCCJB. Based on the same chromosomal location on 2DL and identical seedling responses as Sr54 to several races of Pgt with diverse virulence, we assert that the resistance gene in ‘McNair 701' winter wheat previously designated as SrMcN is most likely Sr54.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.005
Threshold uncertainty score0.010

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.014
GPT teacher head0.174
Teacher spread0.160 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2019
Admission routes3
Has abstractyes

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