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Record W2977396843 · doi:10.1097/pai.0000000000000800

Fit-For-Purpose PD-L1 Biomarker Testing For Patient Selection in Immuno-Oncology: Guidelines For Clinical Laboratories From the Canadian Association of Pathologists-Association Canadienne Des Pathologistes (CAP-ACP)

2019· article· en· W2977396843 on OpenAlexaffabout
Carol C. Cheung, Penny J. Barnes, Gilbert Bigras, Scott Boerner, Jagdish Butany, Fiorella Calabrese, Christian Couture, Jean Deschênes, Hala El‐Zimaity, Gábor Fischer, Pierre Fiset, J. R. Garratt, Laurette Geldenhuys, C. Blake Gilks, Marius Ilié, Diana N. Ionescu, Hyun J. Lim, Lisa Manning, Adnan Mansoor, Robert H. Riddell, Catherine Ross, Sinchita Roy‐Chowdhuri, Alan Spatz, Paul E. Swanson, Victor A. Tron, Ming‐Sound Tsao, Hangjun Wang, Zhaolin Xu, Emina Torlakovic

Bibliographic record

VenueApplied immunohistochemistry & molecular morphology · 2019
Typearticle
Languageen
FieldMedicine
TopicCancer Immunotherapy and Biomarkers
Canadian institutionsUniversity of SaskatchewanSaskatchewan Health AuthorityCalgary Laboratory ServicesSt. Michael's HospitalJewish General HospitalUniversity of ManitobaJuravinski Cancer CentreUniversity of British ColumbiaUniversity of CalgaryMcGill University Health CentreMcGill UniversityBC Cancer AgencyUniversity of AlbertaUniversité LavalDalhousie UniversityRoyal University HospitalUniversity of TorontoUniversity Health Network
Fundersnot available
KeywordsMedicineOncologyCancerInternal medicineLung cancerBiomarkerClinical trialDiseaseGuidelinePathology

Abstract

fetched live from OpenAlex

Since 2014, programmed cell death protein 1 (PD-1)/programmed cell death ligand 1 (PD-L1) checkpoint inhibitors have been approved by various regulatory agencies for the treatment of multiple cancers including melanoma, lung cancer, urothelial carcinoma, renal cell carcinoma, head and neck cancer, classical Hodgkin lymphoma, colorectal cancer, gastroesophageal cancer, hepatocellular cancer, and other solid tumors. Of these approved drug/disease combinations, a subset also has regulatory agency-approved, commercially available companion/complementary diagnostic assays that were clinically validated using data from their corresponding clinical trials. The objective of this document is to provide evidence-based guidance to assist clinical laboratories in establishing fit-for-purpose PD-L1 biomarker assays that can accurately identify patients with specific tumor types who may respond to specific approved immuno-oncology therapies targeting the PD-1/PD-L1 checkpoint. These recommendations are issued as 38 Guideline Statements that address (i) assay development for surgical pathology and cytopathology specimens, (ii) reporting elements, and (iii) quality assurance (including validation/verification, internal quality assurance, and external quality assurance). The intent of this work is to provide recommendations that are relevant to any tumor type, are universally applicable and can be implemented by any clinical immunohistochemistry laboratory performing predictive PD-L1 immunohistochemistry testing.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.057
metaresearch head score (Gemma)0.071
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.993
Threshold uncertainty score0.299

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0570.071
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.002
Bibliometrics0.0060.003
Science and technology studies0.0020.004
Scholarly communication0.0070.003
Open science0.0060.004
Research integrity0.0060.005
Insufficient payload (model declined to judge)0.0040.007

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.056
GPT teacher head0.355
Teacher spread0.299 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations55
Published2019
Admission routes2
Has abstractyes

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