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Utility of Quantiferon Gold Assay as a Screening Tool for Latent TB During Active Inflammatory Bowel Disease

2016· article· en· W2978155282 on OpenAlexaboutno aff
Shahrad Hakimian, Abbas Rupawala, Randall Pellish

Bibliographic record

VenueThe American Journal of Gastroenterology · 2016
Typearticle
Languageen
FieldMedicine
TopicTuberculosis Research and Epidemiology
Canadian institutionsnot available
Fundersnot available
KeywordsMedicineInflammatory bowel diseaseLatent tuberculosisIndeterminateDiseaseInternal medicineTuberculosisImmunologyGastroenterologyUlcerative colitisCrohn's diseaseColonoscopyTuberculinPathologyMycobacterium tuberculosisColorectal cancerCancer

Abstract

fetched live from OpenAlex

Introduction: Tumor necrosis factor alpha (TNFα) is a key cytokine in pathogenesis of Inflammatory Bowel Disease (IBD) and host defense against Tuberculosis (TB). Consequently, TNFα inhibitors result in increased risk of Latent TB (LTB) reactivation. Therefore, screening for LTB is standard protocol prior to initiating anti-TNF therapy.Evidence indicates patients with IBD may display anergy to tuberculin skin testing inthe setting of inflammation resulting in false negative results.The utility of novel LTB screening by Quantiferon Gold assay (QGA) has not been examined in a setting of active IBD. We hypothesize that the QGA may be affected by active inflammation from active Crohn's disease (CD) resulting in equivocal TB screening results. Methods: Patients with CDwho were tested by QGA in the last 5 years were identified. Data extracted for analysis included demographics, CD phenotype, duration of disease, measures of disease activity, imaging and endoscopic data. Statistical analysis was performed using student t-test and chi-square test. Results: We identified 76 patients with CD with QGA testing results. Sixty patients had negative results, 1 was positive and 15 had indeterminate results (Figure 1a). Indeterminate results were more common in younger patients and those previously hospitalized for CD. There was no significant difference between gender, montreal classification, perianal disease, small bowel involvement, smoking status, family history, or extra-intestinal manifestations of IBD (Table 1). In a subset analysis of patients tested during an acute flare (n=29), 13 patients (45%) had an indeterminate test result (Figure 1b). Further analysis showed no correlation between an indeterminate QGA during an acute flare and average ESR or CRP levels (Table 2). However, there was a strong correlation between an indeterminate QGA and active Crohn's flare with ongoing corticosteroid use. Furthermore, indeterminate result was due to inadequate response to positive control in the test (Q-mito-Nil) (table 2).Figure 1Conclusion: Screening for LTB remains standard protocol before initiating anti-TNF therapy. While the QGA is a useful test in this setting, our data suggests that patients with active flare and on steroids at the time of testing may have indeterminate results, which may delay initiation of therapy with anti-TNF agents. An algorithm in patients with indeterminate test result and low risk for TB infection may help minimize delays in initiation of anti-TNF agents.Figure 2Figure 3

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.005
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.011

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0020.005
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0010.001
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.026
GPT teacher head0.313
Teacher spread0.288 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2016
Admission routes1
Has abstractyes

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