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Validation of five search filters for retrieval of clinical practice guidelines produced low precision

2019· article· en· W2979656586 on OpenAlexaff
Carole Lunny, Douglas M Salzwedel, Tracy Liu, Cynthia Ramasubbu, Savannah Gerrish, Lorri Puil, Barbara Mintzes, James Wright

Bibliographic record

VenueJournal of Clinical Epidemiology · 2019
Typearticle
Languageen
FieldMedicine
TopicClinical practice guidelines implementation
Canadian institutionsCochraneUniversity of British Columbia
Fundersnot available
KeywordsInformation retrievalMEDLINEGuidelineComputer scienceSensitivity (control systems)Filter (signal processing)MedicineData miningMedical physics

Abstract

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OBJECTIVES: The aim of the study was to validate search filters for retrieval of clinical practice guidelines (CPGs) in MEDLINE, Embase, and PubMed. STUDY DESIGN AND SETTING: A search for filters for identifying CPGs was conducted in Google and the InterTASC Information Specialists Sub-Group Search Filter Resource. To retrieve a random sample of CPGs to test sensitivity and precision of the filters, we used the TRIP and Epistemonikos databases. The citations were screened independently by two researchers. The sensitivity and precision were calculated. RESULTS: Five search filters were retrieved: two from the Canadian Agency for Drugs and Technologies in Health (CADTH), two from the University of Texas, and one from the MD Anderson Cancer Center Library. A total of 478 records were screened to identify 109 CPGs, which comprised the sample for testing sensitivity and precision. The sensitivity ranged from 87% to 98% for the five search filters and very low precision (<1%) across all databases. CONCLUSION: Knowledge users who are interested in retrieving all relevant CPGs can use the CADTH broad filter with the highest sensitivity. However, our analysis shows that it remains difficult to efficiently identify CPGs because of low precision of five search filters. We recommend searching guideline-specific resources as a more time-efficient approach than searching bibliographic databases.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.152
metaresearch head score (Gemma)0.618
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesnone
DomainCandidate signal: Methods · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.848
Threshold uncertainty score0.805

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.1520.618
Meta-epidemiology (narrow)0.0030.002
Meta-epidemiology (broad)0.0060.006
Bibliometrics0.0200.008
Science and technology studies0.0030.003
Scholarly communication0.0150.007
Open science0.0040.004
Research integrity0.0070.003
Insufficient payload (model declined to judge)0.0050.003

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.697
GPT teacher head0.689
Teacher spread0.008 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designObservational
DomainMethods
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations27
Published2019
Admission routes1
Has abstractno

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