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Record W2979929150 · doi:10.1182/blood.v104.11.215.215

Loss of Ubr1 Cooperatively Synergizes with HOX11 in B Cell Lymphomagenesis.

2004· article· en· W2979929150 on OpenAlexaff
Edwin Chen, Suzana Rosic-Kablar, Lim S. Megan, Hough R. Margaret

Bibliographic record

VenueBlood · 2004
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicUbiquitin and proteasome pathways
Canadian institutionsHealth Sciences CentreUniversity of TorontoSunnybrook Health Science Centre
Fundersnot available
KeywordsBiologyProvirusInsertional mutagenesisMurine leukemia virusB cellMolecular biologySouthern blotRetrovirusBreakpointGene rearrangementGeneticsCancer researchGeneChromosomal translocationGenomeAntibody

Abstract

fetched live from OpenAlex

Abstract The HOX11 homeobox gene was originally identified at the recurrent t(10;14)(q24;q11) translocation breakpoint, a chromosomal abnormality observed in 5–7% of T cell acute lymphoblastic leukemias (T-ALLs). Transgenic mice ectopically expressing HOX11 in the B cell compartment die in their second year of life due to the onset of mature B cell lymphomas. However, the long latency prior to the development of leukemia has led to the hypothesis that additional mutations are necessary prior to the onset of full-blown malignancy. To identify collaborating genetic loci responsible for HOX11-induced B cell lymphomagenesis, proviral insertional mutagenesis, using the mature B cell-specific retrovirus, the murine AIDS (mAIDS) virus, was used. In eight of ten animals, there was an acceleration of development of B cell lymphomas, manifested by the development of a mediastinal mass comprising predominantly of mature IgM+ IgD+ B cells. Histological analysis revealed expansion of splenic germinal centres and hyperplasia of adjacent lymph nodes, consistent with diffuse large B cell lymphoma. Using the provirus as a molecular tag, we identified Ubr1 as a frequent site of proviral insertion. Three mice exhibited an insertion into the 10th exon of the Ubr1 gene, with two animals exhibiting an identical insertion at nucleotide 1295 and another animal exhibiting an insertion at nucleotide 1251. Insertion into this genomic region was confirmed by Southern blotting demonstrating the presence of a rearranged Ubr1 allele, and by the ability to generate a PCR amplicon across the viral-genome junction. Western immunoblot analysis revealed down-regulated expression of the Ubr1 gene product subsequent to viral integration. Ubr1 is a member of the E3 ubiquitin ligase family and participates in the ubiquitin-dependent proteolytic pathway. Among its numerous targets, Ubr1 controls the timely degradation of cohesin subunits during mitosis. Consequently, Ubr1−/−S. cerevisiae are prone to chromosome loss due to chromosome malsegregation during anaphase. We sought to investigate possible similar effects in primary B lymphocyte cultures derived from HOX11Tg/Ubr1+/+ and HOX11Tg/Ubr1−/− mice, and to determine whether HOX11 overexpression in such a Ubr1-null background possesses any synergizing effects on the ploidy of these cells. Direct counting of chromosome numbers from chromosome spreads prepared from HOX11Tg/Ubr1−/− primary B lymphocytes cultured in vitro for 4–5 days revealed increased incidences of aneuploidy and chromosome loss relative to HOX11wt/Ubr1−/− controls (2n=39.51 vs. 2n=39.98). Similarly, micronucleus assays indicated increased presence of micronuclei in HOX11Tg/Ubr1−/− primary B lymphocyte cultures (5.2% vs 0.8%). Additionally, HOX11Tg B lymphocytes exhibit increased cyclin B1 expression and an ability to bypass G2-M arrest induced by the tyrosine kinase inhibitor, genistein. Therefore, the effect of HOX11 in exacerbating chromosome loss in these cultures may be associated with its ability to allow cells to bypass the G2-M cell cycle checkpoint, permitting the accrual of additional chromosome losses and cytogenic abnormalities en route to malignancy.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.001
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.007
GPT teacher head0.204
Teacher spread0.197 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2004
Admission routes1
Has abstractyes

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