Phylogeography of Neomysis americana (Crustacea, Mysida), focusing on the St. Lawrence system
Bibliographic record
Abstract
Abstract Species characterized by low dispersal capacities, such as mysids, usually show evidence of genetic differentiation. Many mysids are broadly distributed and often show eurythermal and euryhaline traits. This study aimed to describe intraspecific genetic structure and the phylogeography of Neomysis americana, a key species of estuarine food webs in northwest Atlantic, using the mitochondrial cytochrome c oxidase subunit I gene. We sampled 26 populations across the St. Lawrence system (SLS) and two along the east coast of North America [Penobscot and Chesapeake Bay (CB)]. Sequencing of 420 individuals revealed three divergent (>3%) lineages (LA, LB, LC) across the sampling area suggesting that N. americana represents a cryptic species complex. The distribution of the lineages was geographically structured. LC occurred in the CB only, whereas LA and LB co-occurred along the SLS and Penobscot Bay. This suggests secondary contact after the last glacial maximum. In the SLS the lineage LA dominated the estuarine transition zone and the Gulf of St. Lawrence, whereas the lineage LB was prevalent in the lower St. Lawrence Estuary, potentially due to different eco-physiological preferences. These results might help to define reasonable entities for research and management.
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.001 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.001 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".