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Record W2980464316 · doi:10.1016/j.jalz.2019.06.2575

P2‐168: IMMUNOHISTOCHEMISTRY OF O‐LINKED N‐ACETYLGLUCOSAMINE TRANSFERASE (OGT) AND AUTOPHAGY MARKER LC3B IN ALZHEIMER'S DISEASE

2019· article· en· W2980464316 on OpenAlexaff
Maya Lichtenstein, Nader Fallah, Howard Feldman, Ian R. Mackenzie, David J. Vocadlo

Bibliographic record

VenueAlzheimer s & Dementia · 2019
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGlycosylation and Glycoproteins Research
Canadian institutionsSimon Fraser UniversityUniversity of British Columbia
Fundersnot available
KeywordsImmunohistochemistryAutophagyStainingTransferaseCerebellumEnzymeCarbohydrate metabolismHippocampusBiologyBiochemistryEndocrinologyChemistryInternal medicinePathologyMedicineImmunology

Abstract

fetched live from OpenAlex

Early disturbances in brain glucose metabolism are characteristic in Alzheimer's Disease (AD). Modification of nuclear and cytoplasmic proteins with O-linked N-acetylglucosamine (O-GlcNAc) is dependent on glucose availability. Increased O-GlcNAc levels have been linked to protein clearance of tau and amyloid precursor protein through autophagy in mouse models. Levels of O-GlcNAc are regulated in a dynamic manner through the action of the enzyme O-linked N-acetylglucosamine transferase (OGT), which installs O-GlcNAc, and β-N-acetylglucosaminidase (OGA), which removes this modification. With disturbances in brain glucose metabolism, including in diabetes mellitus (DM) and AD, O-GlcNAc effects are modified leading to decreased clearance of proteins related to AD. However, there are inconsistent results in reported levels of OGT in AD brain tissue. We set out to evaluate OGT and autophagy in human brains with and without AD and DM with immunohistochemistry (IHC) using semiquantative methods. We examined post mortem brain tissue from patients with pathologically confirmed AD (N=20) and without AD (N=20); with half of each group also having a history of DM. IHC-staining of paraffin-embedded tissue of frontal cortex (FC), hippocampus (HC) and cerebellum (CB) was undertaken for OGT and the autophagy marker LC3-B. Intensity of staining was graded semi-quantitatively from 0 to 4. OGT staining was significantly greater (p=0.016) and there was a trend for LC3-B staining to be less (p=0.057) in the HC of AD cases compared to controls. DM did not confer any differences in the analyses. Staining intensity of OGT differed across brain regions in this study, with increases in AD in the HC but not FC or cerebellum. Despite this apparent local upregulation of OGT, there was less evidence of autophagy, suggesting a signaling impairment in AD. The discordance between HC and FC is unexplained but may be related to the relatively higher burden of AD pathology in the HC. This study adds to the evidence that OGT may be increased in AD brains.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.010

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0030.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.011
GPT teacher head0.268
Teacher spread0.257 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2019
Admission routes1
Has abstractyes

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