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Record W2980885763 · doi:10.1016/j.jalz.2019.08.077

P4‐530: PHOSPHORYLATED TAU INTERACTOME IN THE HUMAN ALZHEIMER'S DISEASE BRAIN

2019· article· en· W2980885763 on OpenAlexaff
Eleanor Drummond, Geoffrey Pires, Claire MacMurray, Manor Askenazi, Shruti Nayak, Marie Bourdon, Beatrix Ueberheide, Thomas Wısnıewskı

Bibliographic record

VenueAlzheimer s & Dementia · 2019
Typearticle
Languageen
FieldMedicine
TopicAlzheimer's disease research and treatments
Canadian institutionsQuest University Canada
Fundersnot available
KeywordsInteractomeProteomicsTau proteinChemistryAlzheimer's disease14-3-3 proteinDiseaseNeurosciencePhosphorylationBiochemistryCell biologyBiologyPathologyMedicine

Abstract

fetched live from OpenAlex

Accumulation of phosphorylated tau (pTau) is a key pathological feature of Alzheimer's disease. pTau accumulation causes synaptic impairment, neuronal dysfunction and formation of neurofibrillary tangles. The pathological actions of pTau are likely mediated by surrounding neuronal proteins, however our knowledge of the specific proteins that pTau interacts with in Alzheimer's disease is surprisingly limited. Therefore, the aim of this study was to comprehensively map the pTau interactome for the first time. We used two complementary proteomics approaches to map the pTau interactome. First, quantitative proteomics was performed on neurofibrillary tangles microdissected from patients with advanced Alzheimer's disease (n=7 cases). Second, affinity purification-mass spectrometry was used to identify which of these proteins specifically bound to PHF1-immunoreactive pTau in the Alzheimer's disease brain (n=5 cases). 542 proteins were identified in neurofibrillary tangles. The abundant detection of proteins known to be present in neurofibrillary tangles including tau, ubiquitin, neurofilament proteins, ApoE and CDK5 validated our approach. Affinity purification-mass spectrometry confirmed that 75 of these 542 proteins were pTau binding partners. 34 proteins had been identified in previous studies to interact with pTau. More excitingly, an additional 34 proteins had previously been associated with Alzheimer's disease, but not linked directly to tau (e.g. synaptic protein VAMP2, RNA binding protein HNRNPA1), therefore we provide new evidence that their role in Alzheimer's disease likely involves their interaction with pTau. In addition, we also identified 7 novel proteins, not previously known to be associated with Alzheimer's disease or with tau. Network analysis showed that the pTau interactome was enriched in proteins involved in phagosome maturation and the protein ubiquitination pathway. Importantly, we were able to pinpoint the specific proteins that pTau interacts with in these pathways for the first time, therefore providing novel pathogenic mechanisms that can be explored in future studies. We present the first comprehensive analysis of the pTau interactome in the human Alzheimer's disease brain. These results reveal novel potential drug targets for the treatment of tauopathies and provide insight into how pTau mediates its pathological effects in Alzheimer's disease.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.029
GPT teacher head0.324
Teacher spread0.295 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2019
Admission routes1
Has abstractyes

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