MétaCan
Menu
Back to cohort
Record W2981477552 · doi:10.1126/science.aav7188

Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility

2019· article· en· W2981477552 on OpenAlexfundno aff
Nikolaos A. Patsopoulos, Sergio E. Baranzini, Adam Santaniello, Parisa Shoostari, Chris Cotsapas, Garrett Wong, Ashley Beecham, Tojo James, Joseph M. Replogle, Ioannis S. Vlachos, Cristin McCabe, Tune H. Pers, Aaron Brandes, Charles C. White, Brendan T Keenan, Maria Cimpean, Phoebe A. Winn, Ioannis-Pavlos Panteliadis, Allison Robbins, Till F. M. Andlauer, Onigiusz Zarzycki, Bénédicte Dubois, An Goris, Helle Bach Søndergaard, Finn Sellebjerg, Per Soelberg Sorensen, Henrik Ullum, Lise Wegner Thørner, Janna Saarela, Isabelle Cournu‐Rebeix, Vincent Damotte, Bertrand Fontaine, Léna Guillot‐Noël, Mark Lathrop, Sandra Vukusic, Achim Berthele, Viola Pongratz, Dorothea Buck, Christiane Gasperi, Christiane Graetz, Verena Grummel, Bernhard Hemmer, Muni Hoshi, Benjamin Knier, Thomas Korn, Christina M. Lill, Felix Luessi, Mark Mühlau, Frauke Zipp, Efthimios Dardiotis, Cristina Agliardi, Antonio Amoroso, Nadia Barizzone, Maria Donata Benedetti, Luisa Bernardinelli, Paola Cavalla, Ferdinando Clarelli, Gıancarlo Comı, Daniele Cusi, Federica Esposito, Laura Ferrè, Daniela Galimberti, Clara Guaschino, Maurizio Leone, Vittorio Martinelli, Lucia Moiola, Marco Salvetti, Melissa Sorosina, Domizia Vecchio, Andrea Zauli, Silvia Santoro, Nicasio Mancini, Miriam Zuccalà, Julia Mescheriakova, Cornelia M. van Duijn, Steffan D. Bos, Elisabeth Gulowsen Celius, Anne Spurkland, Manuel Comabella, Xavier Montalbán, Lars Alfredsson, Izaura Lima Bomfim, David Gómez-Cabrero, Jan Hillert, Maja Jagodic, Magdalena Lindén, Fredrik Piehl, Ilijas Jelčić, Roland Martinꝉ, Mirela Sospedra, Amie Baker, Maria Ban, Clive Hawkins, Pirro G. Hysi, Seema Kalra, Fredrik Karpe, Jyoti Khadake, Geneviève Lachance, Paul Molyneux, Matthew Neville, John Thorpe, Elizabeth M. Bradshaw, Stacy J. Caillier, Peter A. Calabresi, Bruce Cree, Anne Cross, Mary F. Davis, Paul W. I. de Bakker, Silvia Delgado, Marieme Dembele, Keith R. Edwards, Kate Fitzgerald, Irene Y. Frohlich, Pierre‐Antoine Gourraud, Jonathan L. Haines, Håkon Håkonarson, Dorlan Kimbrough, Noriko Isobe, Ioanna Konidari, Ellen Lathi, Michelle Lee, Taibo Li, David An, Andrew Zimmer, Lohith Madireddy, Clara P. Manrique, Mitja Mitrovič, Marta Olah, Ellis Patrick, Margaret A. Pericak‐Vance, Laura Piccio, Cathy Schaefer, Howard L. Weiner, Kasper Lage, Alastair Compston, David A. Hafler, Hanne F. Harbo, Stephen L. Hauser, Graeme J. Stewart, Sandra D’Alfonso, Georgios Hadjigeorgiou, Bruce Taylor, Lisa F. Barcellos, David R. Booth, Rogier Hintzen, Ingrid Kockum, Filippo Martinelli Boneschi, Jacob L. McCauley, Jorge R. Oksenberg, Annette Oturai, Stephen Sawcer, Adrian J. Ivinson, Tomas Olsson, Philip L. De Jager

Bibliographic record

VenueScience · 2019
Typearticle
Languageen
FieldImmunology and Microbiology
TopicT-cell and B-cell Immunology
Canadian institutionsnot available
FundersNational Institute of Environmental Health SciencesNational Institute of Neurological Disorders and StrokeNational Institute of Allergy and Infectious DiseasesNIHR Oxford Biomedical Research CentreMenzies Centre for Australian Studies, King's College London, University of LondonMedical Research CouncilNIHR BioResourceLeonard M. Miller School of MedicineNational Institutes of HealthSorbonne UniversitéUK Dementia Research InstituteNational Institute on AgingMenzies Institute for Medical ResearchFundació Institut de Recerca Hospital Universitari Vall d’HebronNovo Nordisk Foundation Center for Basic Metabolic ResearchUniversité de LyonUniversité de NantesFaculty of Health and Medical Sciences, University of Western AustraliaUniversità degli Studi di TorinoUniversidad Pública de NavarraUniversité Claude Bernard Lyon 1H. Lundbeck A/SHospital for Sick ChildrenTechnische Universität MünchenNorges ForskningsrådRigshospitaletKing's College LondonCentre National de la Recherche ScientifiqueVetenskapsrådetKnut och Alice Wallenbergs StiftelseCambridge University HospitalsKU LeuvenFonds Wetenschappelijk OnderzoekYale UniversityKarolinska InstitutetAFA FörsäkringBundesministerium für Bildung und ForschungInstitut National de la Santé et de la Recherche MédicaleUniversità degli Studi del Piemonte OrientaleBiogenAgence Nationale de la RechercheNational Institute of General Medical SciencesJohannes Gutenberg-Universität MainzUniversity of TasmaniaStrategiske ForskningsrådUniversity of CambridgeChildren's Hospital of PhiladelphiaMultiple Sclerosis SocietyVlaamse regeringNational Institute for Health and Care ResearchKeele UniversityUniversité de LilleNovo NordiskFondation pour l'Aide à la Recherche sur la Sclérose en PlaquesUniversity of PennsylvaniaPerelman School of Medicine, University of PennsylvaniaVertex PharmaceuticalsLundbeckfondenUniversity College LondonWellcome TrustUniversitätsspital ZürichVanderbilt UniversityWestmead Millennium Institute for Medical ResearchMcGill UniversityScleroseforeningenHospices Civils de LyonUniversitetet i OsloJohns Hopkins UniversityForskningsrådet om Hälsa, Arbetsliv och VälfärdBroad InstituteEuropean CommissionMenzies Research Institute TasmaniaUniversità degli Studi di MilanoUniversity of MiamiVanderbilt University Medical CenterHelsingin YliopistoDet Sundhedsvidenskabelige Fakultet, Københavns UniversitetHarvard UniversityUniversity of OxfordKaiser PermanenteNational Multiple Sclerosis SocietyNovo Nordisk FondenCase Western Reserve UniversityHarvard NeuroDiscovery Center
KeywordsMultiple sclerosisImmune systemMajor histocompatibility complexMicrogliaBiologyGeneImmunologyInnate immune systemGeneticsInflammation

Abstract

fetched live from OpenAlex

We analyzed genetic data of 47,429 multiple sclerosis (MS) and 68,374 control subjects and established a reference map of the genetic architecture of MS that includes 200 autosomal susceptibility variants outside the major histocompatibility complex (MHC), one chromosome X variant, and 32 variants within the extended MHC. We used an ensemble of methods to prioritize 551 putative susceptibility genes that implicate multiple innate and adaptive pathways distributed across the cellular components of the immune system. Using expression profiles from purified human microglia, we observed enrichment for MS genes in these brain-resident immune cells, suggesting that these may have a role in targeting an autoimmune process to the central nervous system, although MS is most likely initially triggered by perturbation of peripheral immune responses.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.006

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.013
GPT teacher head0.214
Teacher spread0.201 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1,417
Published2019
Admission routes1
Has abstractyes

Explore more

Same venueScienceSame topicT-cell and B-cell ImmunologyFrench-language works237,207