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Record W2981930255 · doi:10.3389/fgene.2019.01128

Transcriptome of Gonads From High Temperature Induced Sex Reversal During Sex Determination and Differentiation in Chinese Tongue Sole, Cynoglossus semilaevis

2019· article· en· W2981930255 on OpenAlexfundno aff
Qian Wang, Kaiqiang Liu, Bo Feng, Zhihua Zhang, Renkai Wang, Lili Tang, Wensheng Li, Qiye Li, Francesc Piferrer, Changwei Shao

Bibliographic record

VenueFrontiers in Genetics · 2019
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic and Clinical Aspects of Sex Determination and Chromosomal Abnormalities
Canadian institutionsnot available
FundersInstitute of Population and Public HealthKing Saud UniversityNational Natural Science Foundation of China
KeywordsTranscriptomeKEGGBiologySexual differentiationGeneGeneticsSex reversalGene expression

Abstract

fetched live from OpenAlex

Sex determination mechanisms in vertebrates can be broadly divided into genetic sex determination (GSD) and environmental sex determination (ESD). In addition, some fish species display plasticity during sex determination so that environmental factors can also alter the primary sex to the opposite direction without changing the genotype, a phenomenon called environmental sex reversal (ESR). Temperature is the main factor and thus elevated temperature can have a masculinizing effect. Previous studies on temperature-related ESR have been restricted to genes differentially expressed in mature gonads, or lacking a sex reversed pseudomale description. Thus, the molecular mechanism governing ESR remains a mystery in fish. The Chinese tongue sole (Cynoglossus semilaevis) is a perfect suitable model to illuminate the relationship of sex-determination and temperature because the co-existence of GSD (genetic sex determination) and ESD (environmental sex determination). In the present study, undifferentiated gonads from genetic females and males, plus differentiated gonads from males, females, and pseudomales under high temperature and normal temperature treatment were used for comparative transcriptome analysis. A mean of 68.24 M high-quality clean reads were obtained from each library. The differentially expressed genes (DEGs) related to sex and environmental temperature identified that the heat shock protein gene family had an important role in sex reversal induced by high temperature. Enrichment analyses of GO terms and KEGG pathways showed that Neuroactive ligand-receptor interaction, Cortisol synthesis and secretion, and Steroid hormone biosynthesis may be involved in high temperature induced pseudomale formation. Furthermore, via weighted gene co-expression network analyses, two modules were identified to be significantly positive correlated with pseudomale under high temperature. An illustrated protein-protein interaction map drawn by the yellow module identified a hub gene, hsc70. These findings provide insights into the genetic framework underlying sex determination and sexual differentiation, as well as improve our understanding of the underlying ESR mechanism of sex reversal under high temperature.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.247
Threshold uncertainty score0.750

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.004
GPT teacher head0.219
Teacher spread0.215 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations66
Published2019
Admission routes1
Has abstractyes

Explore more

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