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Record W2984216090 · doi:10.1101/831321

Genome-wide association study identifies 48 common genetic variants associated with handedness

2019· preprint· en· W2984216090 on OpenAlexaff
Gabriel Cuéllar-Partida, Joyce Y. Tung, Nicholas Eriksson, Eva Albrecht, Fazil Alıev, Ole A. Andreassen, Inês Barroso, J. Beckmann, Marco P. Boks, Dorret I. Boomsma, Heather A. Boyd, Monique M.B. Breteler, Harry Campbell, Daniel I. Chasman, Lynn Cherkas, Gail Davies, Eco J. C. de Geus, Ian J. Deary, Panos Deloukas, Danielle M. Dick, Johan G. Eriksson, Tõnu Esko, Bjarke Feenstra, Frank Geller, Christian Gieger, Ina Giegling, Scott D. Gordon, Jiali Han, Thomas Folkmann Hansen, Annette M. Hartmann, Caroline Hayward, Kauko Heikkilä, Andrew A. Hicks, Joel N. Hirschhorn, Jouke‐Jan Hottenga, Jennifer E. Huffman, Liang‐Dar Hwang, M. Arfan Ikram, Jaakko Kaprio, John P. Kemp, Kay‐Tee Khaw, Norman Klopp, Bettina Konte, Zoltán Kutalik, Jari Lahti, Xin Li, Ruth J. F. Loos, Michelle Luciano, Sigurður H. Magnússon, Massimo Mangino, Pedro Marques‐Vidal, Nicholas G. Martin, Wendy L. McArdle, Mark I. McCarthy, Carolina Medina‐Gómez, Mads Melbye, Scott A. Melville, Andres Metspalu, Lili Milani, Vincent Mooser, Mari Nelis, Dale R. Nyholt, Kevin S. O’Connell, Roel A. Ophoff, Cameron D. Palmer, Aarno Palotie, Teemu Palviainen, Guillaume Paré, Lavinia Paternoster, Leena Peltonen, Brenda W.J.H. Penninx, Ozren Polašek, Peter P. Pramstaller, Inga Prokopenko, Katri Räikkönen, Samuli Ripatti, Fernando Rivadeneira, Igor Rudan, Dan Rujescu, Johannes H. Smit, George Davey Smith, Jordan W. Smoller, Nicole Soranzo, Tim D. Spector, Beaté St Pourcain, John M. Starr, Hreinn Stefánsson, Stacy Steinberg, Maris Teder‐Laving, Guðmar Þorleifsson, Kāri Stefánsson, Nicholas J. Timpson, André G. Uitterlinden, Cornelia M. van Duijn, Frank J.A. van Rooij, Jaqueline M. Vink, Péter Vollenweider, Eero Vuoksimaa, Gérard Waeber, Nicholas J. Wareham, Nicole M. Warrington, Dawn Waterworth, Thomas Werge, H.‐Erich Wichmann, Elisabeth Widén, Gonneke Willemsen, Alan F. Wright, Margaret J. Wright, Mousheng Xu, Jing Hua Zhao, Peter Kraft, David A. Hinds, Cecilia M. Lindgren, Reedik Mägi, Benjamin M. Neale, David M. Evans, Sarah E. Medland

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2019
Typepreprint
Languageen
FieldNeuroscience
TopicHemispheric Asymmetry in Neuroscience
Canadian institutionsMcMaster University
FundersFP7 HealthNational Institutes of HealthErasmus Medisch CentrumNational Health and Medical Research CouncilAcademy of FinlandLi Ka Shing FoundationZonMwUniversity of QueenslandNational Institute for Health and Care ResearchFolkhälsanin TutkimussäätiöMedical Research CouncilSamfundet FolkhälsanNIHR Oxford Biomedical Research CentreNederlandse Organisatie voor Wetenschappelijk OnderzoekWellcome TrustEuropean Commission
KeywordsGenome-wide association studyGenetic architectureHeritabilityBiologyPedigree chartBrain asymmetryGeneticsSingle-nucleotide polymorphismGenetic associationGenetic correlationLateralization of brain functionGenetic variationNeuroscienceQuantitative trait locusGenotypeGene

Abstract

fetched live from OpenAlex

Abstract Handedness, a consistent asymmetry in skill or use of the hands, has been studied extensively because of its relationship with language and the over-representation of left-handers in some neurodevelopmental disorders. Using data from the UK Biobank, 23andMe and 32 studies from the International Handedness Consortium, we conducted the world’s largest genome-wide association study of handedness (1,534,836 right-handed, 194,198 (11.0%) left-handed and 37,637 (2.1%) ambidextrous individuals). We found 41 genetic loci associated with left-handedness and seven associated with ambidexterity at genome-wide levels of significance (P < 5×10 −8 ). Tissue enrichment analysis implicated the central nervous system and brain tissues including the hippocampus and cerebrum in the etiology of left-handedness. Pathways including regulation of microtubules, neurogenesis, axonogenesis and hippocampus morphology were also highlighted. We found suggestive positive genetic correlations between being left-handed and some neuropsychiatric traits including schizophrenia and bipolar disorder. SNP heritability analyses indicated that additive genetic effects of genotyped variants explained 5.9% (95% CI = 5.8% – 6.0%) of the underlying liability of being left-handed, while the narrow sense heritability was estimated at 12% (95% CI = 7.2% – 17.7%). Further, we show that genetic correlation between left-handedness and ambidexterity is low (r g = 0.26; 95% CI = 0.08 – 0.43) implying that these traits are largely influenced by different genetic mechanisms. In conclusion, our findings suggest that handedness, like many other complex traits is highly polygenic, and that the genetic variants that predispose to left-handedness may underlie part of the association with some psychiatric disorders that has been observed in multiple observational studies.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.008
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow), Scholarly communication
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.381
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0020.008
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.002
Science and technology studies0.0010.000
Scholarly communication0.0010.000
Open science0.0020.001
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.020
GPT teacher head0.236
Teacher spread0.216 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations31
Published2019
Admission routes1
Has abstractyes

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