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Record W2987382174 · doi:10.7554/elife.08351.015

Author response: A meta-analysis of threats to valid clinical inference in preclinical research of sunitinib

2015· peer-review· en· W2987382174 on OpenAlexaff
Valerie C. Henderson, Nadine Demko, Amanda Hakala, Nathalie MacKinnon, Carole A. Federico, Dean Fergusson, Jonathan Kimmelman

Bibliographic record

Venuenot available
Typepeer-review
Languageen
FieldVeterinary
TopicAnimal testing and alternatives
Canadian institutionsOttawa HospitalMcGill University
Fundersnot available
KeywordsSunitinibInferenceMeta-analysisComputational biologyPsychologyMedicineBioinformaticsOncologyBiologyData scienceComputer scienceInternal medicineArtificial intelligenceCancer

Abstract

fetched live from OpenAlex

Preclinical efficacy experiments testing sunitinib in animal cancer models display a lack of methodological rigour, with trim-and-fill analysis suggesting prominent publication bias that leads to an overestimation of treatment effect.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Direct model labels (unvalidated)

Per-model category and study-design labels from the labeling rounds. They are machine output, unvalidated, and the disagreement between models ships as data. No study design here is MEDLINE-validated yet.

Model armCategoriesStudy designConfidence
gptMetaresearch
Domain: Methods · Genre: Commentary
About the Canadian research system: no · About a Canadian topic: no
Not applicablelow
grokno category
Domain: not available · Genre: Commentary
About the Canadian research system: no · About a Canadian topic: no
Not applicablelow
opusMetaresearchMeta-epidemiology (broad)
Domain: Methods · Genre: Other
About the Canadian research system: no · About a Canadian topic: no
Not applicablelow
models splitAgreement compares identical category sets and study designs across arms.

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.152
metaresearch head score (Gemma)0.680
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesnone
DomainCandidate signal: Methods · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Commentary · Consensus signal: Commentary
Teacher disagreement score0.848
Threshold uncertainty score0.000

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.1520.680
Meta-epidemiology (narrow)0.0020.002
Meta-epidemiology (broad)0.0050.011
Bibliometrics0.0040.006
Science and technology studies0.0020.002
Scholarly communication0.0040.005
Open science0.0040.004
Research integrity0.0190.013
Insufficient payload (model declined to judge)0.0490.011

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.961
GPT teacher head0.739
Teacher spread0.221 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Labeled directly by 3 models reading the full record.

MetaresearchMeta-epidemiology (broad)

The models disagree on parts of this classification; every voice is preserved in the section at the end of the page.

Study designNot applicable
DomainMethods
GenreCommentary · Other

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2015
Admission routes1
Has abstractyes

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