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Record W2990018441 · doi:10.1136/sextrans-2019-sti.332

P173 Investigating varicella-zoster virus-specific T cells through the lenses of HIV

2019· article· en· W2990018441 on OpenAlexaff
Carolina Campos Lima Moreira, Cátia T. Perciani, Thomas T. Murooka, Walter Jaoko, Kelly S. MacDonald, KAVI-ICR Team

Bibliographic record

VenuePoster presentations · 2019
Typearticle
Languageen
FieldMedicine
TopicHerpesvirus Infections and Treatments
Canadian institutionsUniversity of TorontoUniversity of Manitoba
Fundersnot available
KeywordsVirologyVaricella zoster virusCD8ImmunologyIL-2 receptorVirusT cellBiologyMedicineImmune system

Abstract

fetched live from OpenAlex

<h3>Background</h3> Varicella-zoster virus (VZV), also known as chickenpox virus, constitutes a promising vector for a successful HIV vaccine. As an effort to scrutinize its potential, we are characterizing the susceptibility of VZV-specific CD4 T cells to HIV infection and the phenotypic profile of both CD4 and CD8 T cells. <h3>Methods</h3> Blood T cells isolated from a cohort of healthy Kenyan women with pre-immunity to VZV (NCT02514018) were stimulated <i>in vitro</i> using 15-mer peptides representing VZV glycoprotein E (gE) and VZV Open Reading Frame 4 (ORF4). CD4 and CD8 T cell memory phenotypes were characterized by flow cytometry based on the expression of CCR7/CD45RA. The activation status of VZV-specific CD4 T cells was measured by the expression of HLA-DR, CD69, and CD25 after 6-day stimulation with gE and ORF4 peptides. Susceptibility to HIV infection was assessed using <i>in vitro</i> infection with a CCR5-tropic virus. DMSO and CMV peptides were used as negative and positive controls, respectively. <h3>Results</h3> A similar frequency of central memory CD4 T cells (T<sub>CM</sub>) (median 24%, IQR 18%-32%) and effector memory CD4 T cells (T<sub>EM</sub>) (median 27%, IQR 20%-32%) was observed in our cohort. The predominant CD8 memory subtype was T<sub>EMRA</sub> (median 28%, IQR 21%-40%) followed by T<sub>EM</sub> cells (median 12%, IQR 8%-19%) (n=45). Preliminary results show our ability to expand VZV-specific cells in culture using gE and ORF4 as stimuli and that these cells highly express the marker HLA-DR. Their susceptibility to <i>in vitro HIV</i> infection is currently under investigation using CMV-specific cells as comparator. <h3>Conclusion</h3> A viral vector able to sustain CD8 T<sub>EM</sub> responses without fueling the immune system with HIV target cells constitutes an ideal candidate for an HIV vaccine. Hence, our study sheds light on key aspects of VZV-specific immunity that will help determining its future as a vector in an HIV vaccine. <h3>Disclosure</h3> No significant relationships.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.007
Threshold uncertainty score0.022

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0070.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.042
GPT teacher head0.305
Teacher spread0.263 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2019
Admission routes1
Has abstractyes

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