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Record W2990866452 · doi:10.1111/febs.15147

Role of cardiac ryanodine receptor calmodulin‐binding domains in mediating the action of arrhythmogenic calmodulin N‐domain mutation N54I

2019· article· en· W2990866452 on OpenAlexafffund
Mads T. Søndergaard, Yingjie Liu, Wenting Guo, Jinhong Wei, Ruiwu Wang, Malene Brohus, Michael T. Overgaard, S.R. Wayne Chen

Bibliographic record

VenueFEBS Journal · 2019
Typearticle
Languageen
FieldMedicine
TopicCardiac electrophysiology and arrhythmias
Canadian institutionsLibin Cardiovascular Institute of AlbertaUniversity of Calgary
FundersInstitute of Circulatory and Respiratory HealthCanadian Institutes of Health ResearchNovo Nordisk FondenTeknologi og Produktion, Det Frie ForskningsrådLundbeckfondenHeart and Stroke Foundation of CanadaDet Obelske FamiliefondNatur og Univers, Det Frie Forskningsråd
KeywordsCalmodulinRyanodine receptorMutationReceptorAction (physics)ChemistryDomain (mathematical analysis)Cell biologyInternal medicineCalciumBiologyBiochemistryMedicinePhysicsGeneMathematics

Abstract

fetched live from OpenAlex

The Ca2+‐sensing protein calmodulin (CaM) inhibits cardiac ryanodine receptor (RyR2)‐mediated Ca2+ release. CaM mutations associated with arrhythmias and sudden cardiac death have been shown to diminish CaM‐dependent inhibition of RyR2, but the underlying mechanisms are not well understood. Nearly all arrhythmogenic CaM mutations identified are located in the C‐domain of CaM and exert marked effects on Ca2+ binding to CaM and on the CaM C‐domain interaction with the CaM‐binding domain 2 (CaMBD2) in RyR2. Interestingly, the arrhythmogenic N‐domain mutation CaM‐N54I has little or no effect on Ca2+ binding to CaM or the CaM C‐domain‐RyR2 CaMBD2 interaction, unlike all CaM C‐domain mutations. This suggests that CaM‐N54I may diminish CaM‐dependent RyR2 inhibition by affecting CaM N‐domain interactions with RyR2 CaMBDs other than CaMBD2. To explore this possibility, we assessed the effects of deleting each of the four known CaMBDs in RyR2 (CaMBD1a, ‐1b, ‐2, or ‐3) on the CaM‐dependent inhibition of RyR2‐mediated Ca2+ release in HEK293 cells. We found that removing CaMBD1a, CaMBD1b, or CaMBD3 did not alter the effects of CaM‐N54I or CaM‐WT on RyR2 inhibition. On the other hand, deleting RyR2‐CaMBD2 abolished the effects of both CaM‐N54I and CaM‐WT. Our results support that CaM‐N54I causes aberrant RyR2 regulation via an uncharacterized CaMBD or less likely CaMBD2, and that RyR2 CaMBD2 is required for the actions of both N‐ and C‐domain CaM mutations. Moreover, our results show that CaMBD1a is central to RyR2 regulation, but CaMBD1a, CaMBD1b, and CaMBD3 are not required for CaM‐dependent inhibition of RyR2 in HEK293 cells.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.256
Teacher spread0.248 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations15
Published2019
Admission routes2
Has abstractyes

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