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Record W2990973034 · doi:10.1177/0271678x20905433

Guidelines for the content and format of PET brain data in publications and archives: A consensus paper

2020· article· en· W2990973034 on OpenAlexaff
Gitte M. Knudsen, Melanie Ganz, Stefan Appelhoff, Ronald Boellaard, Guy Bormans, Richard E. Carson, Ciprian Catana, Doris J. Doudet, Antony D. Gee, Douglas N. Greve, Roger N. Gunn, Christer Halldin, Peter Herscovitch, Henry Huang, Sune H. Keller, Adriaan A. Lammertsma, Rupert Lanzenberger, Jeih-San Liow, Talakad G. Lohith, Mark Lubberink, Chul Hyoung Lyoo, J. John Mann, Granville J. Matheson, Thomas E. Nichols, Martin Nørgaard, Todd Ogden, Ramin V. Parsey, Victor W. Pike, Julie C. Price, Gaia Rizzo, Pedro Rosa‐Neto, Martin Schain, Peter J. H. Scott, Graham E. Searle, Mark Slifstein, Tetsuya Suhara, Peter S. Talbot, Adam G. Thomas, Mattia Veronese, Dean F. Wong, Maqsood Yaqub, Francesca Zanderigo, Sami S. Zoghbi, Robert B. Innis

Bibliographic record

VenueJournal of Cerebral Blood Flow & Metabolism · 2020
Typearticle
Languageen
FieldMedicine
TopicMedical Imaging Techniques and Applications
Canadian institutionsMcGill UniversityDouglas Mental Health University InstituteMontreal Neurological Institute and HospitalCanadian Sport Centre Pacific
FundersNational Center for Advancing Translational SciencesNational Institute of Mental HealthNational Institutes of HealthLundbeckfondenWellcome Trust
KeywordsNeuroimagingData sharingComputer scienceData scienceData setPreprocessorSample (material)Set (abstract data type)Multidisciplinary approachPositron emission tomographyStatistical powerData miningMedical physicsArtificial intelligenceInformation retrievalPsychologyMedicineNuclear medicineStatisticsPolitical science

Abstract

fetched live from OpenAlex

It is a growing concern that outcomes of neuroimaging studies often cannot be replicated. To counteract this, the magnetic resonance (MR) neuroimaging community has promoted acquisition standards and created data sharing platforms, based on a consensus on how to organize and share MR neuroimaging data. Here, we take a similar approach to positron emission tomography (PET) data. To facilitate comparison of findings across studies, we first recommend publication standards for tracer characteristics, image acquisition, image preprocessing, and outcome estimation for PET neuroimaging data. The co-authors of this paper, representing more than 25 PET centers worldwide, voted to classify information as mandatory, recommended, or optional. Second, we describe a framework to facilitate data archiving and data sharing within and across centers. Because of the high cost of PET neuroimaging studies, sample sizes tend to be small and relatively few sites worldwide have the required multidisciplinary expertise to properly conduct and analyze PET studies. Data sharing will make it easier to combine datasets from different centers to achieve larger sample sizes and stronger statistical power to test hypotheses. The combining of datasets from different centers may be enhanced by adoption of a common set of best practices in data acquisition and analysis.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.002
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Commentary · Consensus signal: none
Teacher disagreement score0.765
Threshold uncertainty score0.264

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.156
GPT teacher head0.363
Teacher spread0.207 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreCommentary

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations71
Published2020
Admission routes1
Has abstractyes

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