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Preliminary DNA Barcode Report on the Marine Red Algae (Rhodophyta) from the British Overseas Territory of Tristan da Cunha

2019· article· en· W2991303675 on OpenAlexaffabout
Gary W. Saunders, Cody Brooks, Sue Scott

Bibliographic record

VenueCryptogamie Algologie · 2019
Typearticle
Languageen
FieldEarth and Planetary Sciences
TopicMarine and coastal plant biology
Canadian institutionsUniversity of New Brunswick
Fundersnot available
KeywordsSporophyteBiologyDNA barcodingAlgaeGenusBotanyRed algaeFloristicsZoologyEcology

Abstract

fetched live from OpenAlex

The current manuscript is the first in a series intended to publish accumulating DNA barcode data to make them accessible to the scientific community. Focused on 135 specimens of red algae from the remote islands of Tristan da Cunha, part of the British Overseas Territory of Saint Helena, Ascension and Tristan da Cunha, the 47 (possibly 48; see notes with Lophurella sp. 1Tris) genetic groups uncovered during this project are compared to the only detailed floristic work for this region completed by Baardseth in 1941. A number of taxonomic anomalies are reported with indications for eventual solutions that await study of the type material of the associated morphospecies. Species previously assigned by Baardseth to the genus Epymenia Kützing are formally transferred to Rhodymenia Greville as R. elongata (Baardseth), comb. nov., (including E. marginifera Baardseth) and R. flabellata (Baardseth), comb. nov. A number of range extensions are reported including species such as Ceramium secundatum (Lyngbye) C.Agardh, Colaconema caespitosum (J.Agardh) Jackelman, Stegenga & J.J.Bolton, Helminthocladia calvadosii (J.V.Lamour. ex Duby) Setch. and Porphyra mumfordii S.C.Lindstrom & K.M.Cole, which have likely been distributed by human activities. We also note that the sporophyte of the supposedly narrowly distributed Schimmelmannia elegans has been collected from both British Columbia, Canada, and Queensland, Australia, consistent with other observations that sporophytes of red algal species with alternations of heteromorphic generations are commonly more broadly distributed than the gametophytic stage. This species, although originally described by Baardseth from these mid Atlantic islands, may also be introduced.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.361
Threshold uncertainty score0.718

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0050.005
Science and technology studies0.0020.001
Scholarly communication0.0010.000
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0060.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.022
GPT teacher head0.214
Teacher spread0.193 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations10
Published2019
Admission routes2
Has abstractyes

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