MétaCan
Menu
Back to cohort
Record W2991808555 · doi:10.7554/elife.49298

Differences in topological progression profile among neurodegenerative diseases from imaging data

2019· article· en· W2991808555 on OpenAlexfundno aff
Sara Garbarino, Marco Lorenzi, Neil P. Oxtoby, Elisabeth J. Vinke, Razvan Marinescu, Arman Eshaghi, M. Arfan Ikram, Wiro J. Niessen, Olga Ciccarelli, Frederik Barkhof, Jonathan M. Schott, Meike W. Vernooij, Daniel C. Alexander

Bibliographic record

VenueeLife · 2019
Typearticle
Languageen
FieldComputer Science
TopicTopological and Geometric Data Analysis
Canadian institutionsnot available
FundersEngineering and Physical Sciences Research CouncilCanadian Institutes of Health ResearchHorizon 2020 Framework ProgrammeNational Institutes of HealthGenentechIXICOH. Lundbeck A/SServierEisaiAgence Nationale de la RechercheWeston Brain InstituteNational Institute on AgingNational Institute for Health and Care ResearchNorthern California Institute for Research and EducationBioClinicaBiogenPfizerNovartis Pharmaceuticals CorporationAlzheimer's AssociationUniversité Côte d’AzurEli Lilly and CompanyBristol-Myers SquibbUniversity College London Hospitals NHS Foundation TrustJanssen Alzheimer Immunotherapy Research And DevelopmentEuropean CommissionAlzheimer's Disease Neuroimaging InitiativeMeso Scale DiagnosticsMichael J. Fox Foundation for Parkinson's Research
KeywordsCohortDiseaseNeurodegenerationAtrophyTopological data analysisTopology (electrical circuits)BiologyNeuroscienceMedicinePathologyComputer scienceMathematicsAlgorithm

Abstract

fetched live from OpenAlex

The spatial distribution of atrophy in neurodegenerative diseases suggests that brain connectivity mediates disease propagation. Different descriptors of the connectivity graph potentially relate to different underlying mechanisms of propagation. Previous approaches for evaluating the influence of connectivity on neurodegeneration consider each descriptor in isolation and match predictions against late-stage atrophy patterns. We introduce the notion of a topological profile — a characteristic combination of topological descriptors that best describes the propagation of pathology in a particular disease. By drawing on recent advances in disease progression modeling, we estimate topological profiles from the full course of pathology accumulation, at both cohort and individual levels. Experimental results comparing topological profiles for Alzheimer’s disease, multiple sclerosis and normal ageing show that topological profiles explain the observed data better than single descriptors. Within each condition, most individual profiles cluster around the cohort-level profile, and individuals whose profiles align more closely with other cohort-level profiles show features of that cohort. The cohort-level profiles suggest new insights into the biological mechanisms underlying pathology propagation in each disease.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.010
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.006
Threshold uncertainty score0.009

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0020.010
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.001
Bibliometrics0.0060.003
Science and technology studies0.0000.001
Scholarly communication0.0010.001
Open science0.0000.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.030
GPT teacher head0.282
Teacher spread0.251 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations15
Published2019
Admission routes1
Has abstractyes

Explore more

Same venueeLifeSame topicTopological and Geometric Data AnalysisFrench-language works237,207