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Record W2996005172 · doi:10.1016/j.cpc.2019.107110

Nektar++: Enhancing the capability and application of high-fidelity spectral/hp element methods

2019· article· lv· W2996005172 on OpenAlexaboutno aff
David Moxey, Chris D. Cantwell, Yan Bao, Andrea Cassinelli, Giacomo Castiglioni, Sehun Chun, Emilia Juda, Ehsan Kazemi, Kilian Lackhove, Julian Marcon, Gianmarco Mengaldo, Douglas Serson, Michael G. Turner, Hui Xu, Joaquim Peiró, Robert M. Kirby, Spencer J. Sherwin

Bibliographic record

VenueComputer Physics Communications · 2019
Typearticle
Languagelv
FieldEngineering
TopicComputational Fluid Dynamics and Aerodynamics
Canadian institutionsnot available
FundersArmy Research OfficeAir Force Office of Scientific ResearchEngineering and Physical Sciences Research CouncilNational Natural Science Foundation of ChinaDeutsche ForschungsgemeinschaftSeventh Framework ProgrammeBritish Heart FoundationNational Research FoundationU.S. Department of EnergyEuropean CommissionNational Science FoundationRoyal SocietyNational Research Foundation of Korea
KeywordsSolverComputer sciencePython (programming language)ScalabilityHigh fidelityCurvilinear coordinatesPolygon meshComputational scienceAlgorithmTheoretical computer scienceComputer graphics (images)MathematicsPhysicsGeometryProgramming language

Abstract

fetched live from OpenAlex

Nektar++ is an open-source framework that provides a flexible, high-performance and scalable platform for the development of solvers for partial differential equations using the high-order spectral/hp element method. In particular, Nektar++ aims to overcome the complex implementation challenges that are often associated with high-order methods, thereby allowing them to be more readily used in a wide range of application areas. In this paper, we present the algorithmic, implementation and application developments associated with our Nektar++ version 5.0 release. We describe some of the key software and performance developments, including our strategies on parallel I/O, on in situ processing, the use of collective operations for exploiting current and emerging hardware, and interfaces to enable multi-solver coupling. Furthermore, we provide details on a newly developed Python interface that enables a more rapid introduction for new users unfamiliar with spectral/hp element methods, C++ and/or Nektar++. This release also incorporates a number of numerical method developments – in particular: the method of moving frames (MMF), which provides an additional approach for the simulation of equations on embedded curvilinear manifolds and domains; a means of handling spatially variable polynomial order; and a novel technique for quasi-3D simulations (which combine a 2D spectral element and 1D Fourier spectral method) to permit spatially-varying perturbations to the geometry in the homogeneous direction. Finally, we demonstrate the new application-level features provided in this release, namely: a facility for generating high-order curvilinear meshes called NekMesh; a novel new AcousticSolver for aeroacoustic problems; our development of a ‘thick’ strip model for the modelling of fluid–structure interaction (FSI) problems in the context of vortex-induced vibrations (VIV). We conclude by commenting on some lessons learned and by discussing some directions for future code development and expansion. Program Title: Nektar++ Program Files doi: http://dx.doi.org/10.17632/9drxd9d8nx.1 Code Ocean Capsule: https://doi.org/10.24433/CO.9865757.v1 Licensing provisions: MIT Programming language: C++ External routines/libraries: Boost, METIS, FFTW, MPI, Scotch, PETSc, TinyXML, HDF5, OpenCASCADE, CWIPI Nature of problem: The Nektar++ framework is designed to enable the discretisation and solution of time-independent or time-dependent partial differential equations. Solution method: spectral/hp element method

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.006
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: Simulation or modeling
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.018
Threshold uncertainty score0.059

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0020.006
Meta-epidemiology (narrow)0.0020.001
Meta-epidemiology (broad)0.0010.002
Bibliometrics0.0010.001
Science and technology studies0.0010.001
Scholarly communication0.0030.003
Open science0.0050.004
Research integrity0.0020.004
Insufficient payload (model declined to judge)0.0180.008

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.011
GPT teacher head0.280
Teacher spread0.269 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations141
Published2019
Admission routes1
Has abstractyes

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