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Record W3005314832 · doi:10.1101/2020.02.07.939504

A fast genetically encoded fluorescent sensor for faithful <i>in vivo</i> acetylcholine detection in mice, fish, worms and flies

2020· preprint· en· W3005314832 on OpenAlexaff
Philip M. Borden, Peng Zhang, Amol V. Shivange, Jonathan S. Marvin, Joseph Cichon, Chuntao Dan, Kaspar Podgorski, Antonio Figueiredo, Ondřej Novák, Masashi Tanimoto, Eiji Shigetomi, Mark A. Lobas, Hyun-Tae Kim, Paula K. Zhu, Yajun Zhang, Wan Zheng, Chengcheng Fan, Guangfu Wang, Bowen Xiang, L. H. Gan, Guang‐Xian Zhang, Kaiming Guo, Lin Li, Yuan Cai, Andrew G. Yee, Abhi Aggarwal, Christopher Ford, Douglas C. Rees, Dirk Dietrich, Baljit S. Khakh, Jeremy S. Dittman, Wen‐Biao Gan, Minoru Koyama, Vivek Jayaraman, Joseph F. Cheer, Henry A. Lester, Loren L. Looger

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2020
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicNicotinic Acetylcholine Receptors Study
Canadian institutionsUniversity of Alberta
FundersSLAC National Accelerator LaboratoryBasic Energy SciencesOffice of International Science and EngineeringNational Institute of General Medical SciencesJapan Society for the Promotion of ScienceOffice of ScienceNational Institutes of HealthBiological and Environmental ResearchNational Natural Science Foundation of ChinaDeutsches Zentrum für Neurodegenerative ErkrankungenDeutsche ForschungsgemeinschaftNational Alliance for Research on Schizophrenia and DepressionAlzheimer's AssociationU.S. Department of EnergyCalifornia Institute of TechnologyHoward Hughes Medical InstituteTobacco-Related Disease Research ProgramGordon and Betty Moore Foundation
KeywordsAcetylcholineCholinergicIn vivoFluorescenceGreen fluorescent proteinBiologyFish <Actinopterygii>Fluorescent proteinCell biologyPeriplasmic spaceBiochemistryGeneGeneticsNeurosciencePharmacologyEscherichia coliFishery

Abstract

fetched live from OpenAlex

Abstract Here we design and optimize a genetically encoded fluorescent indicator, iAChSnFR, for the ubiquitous neurotransmitter acetylcholine, based on a bacterial periplasmic binding protein. iAChSnFR shows large fluorescence changes, rapid rise and decay kinetics, and insensitivity to most cholinergic drugs. iAChSnFR revealed large transients in a variety of slice and in vivo preparations in mouse, fish, fly and worm. iAChSnFR will be useful for the study of acetylcholine in all animals.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.011
Threshold uncertainty score0.999

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.009
GPT teacher head0.224
Teacher spread0.215 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations93
Published2020
Admission routes1
Has abstractyes

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