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Record W3006055254 · doi:10.1158/1055-9965.epi-19-0891

Mendelian Randomization of Circulating Polyunsaturated Fatty Acids and Colorectal Cancer Risk

2020· article· en· W3006055254 on OpenAlexafffund
Nikhil K. Khankari, Barbara L. Banbury, Maria Carolina Borges, Philip Haycock, Demetrius Albanes, Volker Arndt, Sonja I. Berndt, Stéphane Bezieau, Peter T. Campbell, Graham Casey, Andrew T. Chan, Jenny Chang‐Claude, David V. Conti, Michelle Cotterchio, Dallas R. English, Jane C. Figueiredo, Graham G. Giles, Edward L. Giovannucci, Marc J. Gunter, Jochen Hampe, Michael Hoffmeister, John L. Hopper, Mark A. Jenkins, Amit D. Joshi, Loı̈c Le Marchand, Mathieu Lemire, Christopher I. Li, Li Li, Annika Lindblom, Vicente Martín, Vı́ctor Moreno, Polly A. Newcomb, Kenneth Offit, Paul D.P. Pharoah, Gad Rennert, Lori C. Sakoda, Clemens Schafmayer, Stephanie L. Schmit, Martha L. Slattery, Mingyang Song, Stephen N. Thibodeau, Cornelia M. Ulrich, Stephanie J. Weinstein, Emily White, Aung Ko Win, Alicja Wolk, Michael O. Woods, Anna H. Wu, Qiuyin Cai, Joshua C. Denny, Todd L. Edwards, Harvey J. Murff, Stephen B. Gruber, Ulrike Peters, Wei Zheng

Bibliographic record

VenueCancer Epidemiology Biomarkers & Prevention · 2020
Typearticle
Languageen
FieldMedicine
TopicInflammatory mediators and NSAID effects
Canadian institutionsMemorial University of NewfoundlandOntario Institute for Cancer ResearchCancer Care Ontario
FundersNational Institute of Environmental Health SciencesNational Cancer InstituteNational Human Genome Research InstituteNational Heart, Lung, and Blood InstituteNational Health and Medical Research CouncilConseil Régional des Pays de la LoireU.S. Public Health ServiceU.S. Department of Health and Human ServicesDHHS Office of the SecretaryGroupement des Entreprises Françaises dans la lutte contre le CancerConsejería de Educación, Junta de Castilla y LeónVetenskapsrådetMedical Research CouncilSwedish Cancer FoundationAssociation Anne de Bretagne GenetiqueCanadian Institutes of Health ResearchCalifornia Department of Public HealthMatthias Lackas-StiftungStockholms Läns LandstingDivision of Cancer Prevention, National Cancer InstituteNational Institute of Diabetes and Digestive and Kidney DiseasesMoffitt Cancer CenterWorld Health OrganizationCancer Research UKAmerican Cancer SocietyInstituto de Salud Carlos IIIXarxa de Bancs de Tumors de CatalunyaCanadian Cancer Society Research InstituteNational Institutes of HealthJunta de Castilla y León
KeywordsMendelian randomizationColorectal cancerMedicineInternal medicinePolyunsaturated fatty acidAspirinDocosapentaenoic acidConfoundingEicosapentaenoic acidOncologyGenome-wide association studyConfidence intervalLower riskCancerSingle-nucleotide polymorphismEndocrinologyBiologyGeneticsGenotypeFatty acidGeneBiochemistryGenetic variants

Abstract

fetched live from OpenAlex

Abstract Background: Results from epidemiologic studies examining polyunsaturated fatty acids (PUFA) and colorectal cancer risk are inconsistent. Mendelian randomization may strengthen causal inference from observational studies. Given their shared metabolic pathway, examining the combined effects of aspirin/NSAID use with PUFAs could help elucidate an association between PUFAs and colorectal cancer risk. Methods: Information was leveraged from genome-wide association studies (GWAS) regarding PUFA-associated SNPs to create weighted genetic scores (wGS) representing genetically predicted circulating blood PUFAs for 11,016 non-Hispanic white colorectal cancer cases and 13,732 controls in the Genetics and Epidemiology of Colorectal Cancer Consortium (GECCO). Associations per SD increase in the wGS were estimated using unconditional logistic regression. Interactions between PUFA wGSs and aspirin/NSAID use on colorectal cancer risk were also examined. Results: Modest colorectal cancer risk reductions were observed per SD increase in circulating linoleic acid [ORLA = 0.96; 95% confidence interval (CI) = 0.93–0.98; P = 5.2 × 10−4] and α-linolenic acid (ORALA = 0.95; 95% CI = 0.92–0.97; P = 5.4 × 10−5), whereas modest increased risks were observed for arachidonic (ORAA = 1.06; 95% CI = 1.03–1.08; P = 3.3 × 10−5), eicosapentaenoic (OREPA = 1.04; 95% CI = 1.01–1.07; P = 2.5 × 10−3), and docosapentaenoic acids (ORDPA = 1.03; 95% CI = 1.01–1.06; P = 1.2 × 10−2). Each of these effects was stronger among aspirin/NSAID nonusers in the stratified analyses. Conclusions: Our study suggests that higher circulating shorter-chain PUFAs (i.e., LA and ALA) were associated with reduced colorectal cancer risk, whereas longer-chain PUFAs (i.e., AA, EPA, and DPA) were associated with an increased colorectal cancer risk. Impact: The interaction of PUFAs with aspirin/NSAID use indicates a shared colorectal cancer inflammatory pathway. Future research should continue to improve PUFA genetic instruments to elucidate the independent effects of PUFAs on colorectal cancer.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.017
metaresearch head score (Gemma)0.054
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.017
Threshold uncertainty score0.091

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0170.054
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.002
Science and technology studies0.0000.001
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0040.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.034
GPT teacher head0.334
Teacher spread0.300 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations38
Published2020
Admission routes2
Has abstractyes

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