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Record W3011720109 · doi:10.1038/s41598-020-61297-4

Privacy-preserving distributed learning of radiomics to predict overall survival and HPV status in head and neck cancer

2020· article· en· W3011720109 on OpenAlexaff
Marta Bogowicz, Arthur Jochems, Timo M. Deist, Stephanie Tanadini‐Lang, Shao Hui Huang, Biu Chan, John Waldron, Scott V. Bratman, Brian O’Sullivan, Oliver Riesterer, Gabriela Studer, Jan Unkelbach, Samir Barakat, Ruud H. Brakenhoff, Irene H. Nauta, Silvia Eleonora Gazzani, Giuseppina Calareso, Kathrin Scheckenbach, Frank Hoebers, Frederik Wesseling, Simon Keek, Sebastian Sanduleanu, Ralph T. H. Leijenaar, Marije R. Vergeer, C. René Leemans, Chris H.J. Terhaard, Michiel W. M. van den Brekel, Olga Hamming‐Vrieze, Martijn A. van der Heijden, Hesham Elhalawani, Clifton D. Fuller, Matthias Gückenberger

Bibliographic record

VenueScientific Reports · 2020
Typearticle
Languageen
FieldMedicine
TopicRadiomics and Machine Learning in Medical Imaging
Canadian institutionsPrincess Margaret Cancer CentreUniversity of Toronto
FundersNational Institute of Biomedical Imaging and BioengineeringStichting voor de Technische WetenschappenNational Institute of Dental and Craniofacial ResearchCenter for Translational Molecular MedicineNational Cancer InstituteKWF KankerbestrijdingNational Institutes of HealthSchweizerischer Nationalfonds zur Förderung der Wissenschaftlichen ForschungNederlandse Organisatie voor Wetenschappelijk OnderzoekHealth Foundation LimburgNational Science FoundationEurostarsHorizon 2020 Framework ProgrammeCancer Research UKAndrew Sabin Family FoundationDivision of Mathematical SciencesUniversity of Texas MD Anderson Cancer CenterInterregElekta
KeywordsRadiomicsFeature selectionLogistic regressionComputer scienceWorkflowFeature (linguistics)Artificial intelligenceCluster analysisMachine learningReceiver operating characteristicHead and neck cancerData miningCancerMedicineDatabaseInternal medicine

Abstract

fetched live from OpenAlex

Abstract A major challenge in radiomics is assembling data from multiple centers. Sharing data between hospitals is restricted by legal and ethical regulations. Distributed learning is a technique, enabling training models on multicenter data without data leaving the hospitals (“privacy-preserving” distributed learning). This study tested feasibility of distributed learning of radiomics data for prediction of two year overall survival and HPV status in head and neck cancer (HNC) patients. Pretreatment CT images were collected from 1174 HNC patients in 6 different cohorts. 981 radiomic features were extracted using Z-Rad software implementation. Hierarchical clustering was performed to preselect features. Classification was done using logistic regression. In the validation dataset, the receiver operating characteristics (ROC) were compared between the models trained in the centralized and distributed manner. No difference in ROC was observed with respect to feature selection. The logistic regression coefficients were identical between the methods (absolute difference <10 −7 ). In comparison of the full workflow (feature selection and classification), no significant difference in ROC was found between centralized and distributed models for both studied endpoints (DeLong p > 0.05). In conclusion, both feature selection and classification are feasible in a distributed manner using radiomics data, which opens new possibility for training more reliable radiomics models.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.003
metaresearch head score (Gemma)0.006
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: Simulation or modeling
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.003
Threshold uncertainty score0.017

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0030.006
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.018
GPT teacher head0.296
Teacher spread0.278 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations80
Published2020
Admission routes1
Has abstractyes

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