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Record W3012585693 · doi:10.1101/2020.03.20.997783

A comparative analysis reveals irreproducibility in searches of scientific literature

2020· preprint· en· W3012585693 on OpenAlexafffund
Gábor Pozsgai, Gábor L. Löveï, Liette Vasseur, Geoff M. Gurr, Péter Batáry, János Korponai, Nick A. Littlewood, Jian Liu, Arnold Móra, John J. Obrycki, Olivia Reynolds, Jenni A. Stockan, Heather VanVolkenburg, Jie Zhang, Wenwu Zhou, Minsheng You

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2020
Typepreprint
Languageen
FieldDecision Sciences
Topicscientometrics and bibliometrics research
Canadian institutionsBrock University
FundersHigher Education Discipline Innovation ProjectBrock University
KeywordsConsistency (knowledge bases)Search engineScopusInformation retrievalComputer scienceWeb of scienceCornerstoneScientific literatureData scienceKeyword searchSearch analyticsWorld Wide WebWeb search queryGeographyMEDLINEPolitical science

Abstract

fetched live from OpenAlex

Abstract Repeatability is the cornerstone of science and it is particularly important for systematic reviews. However, little is known on how database and search engine choices influence replicability. Here, we present a comparative analysis of time-synchronized searches at different locations in the world, revealing a large variation among the hits obtained within each of the several search terms using different search engines. We found that PubMed and Scopus returned geographically consistent results to identical search strings, Google Scholar and Web of Science varied substantially both in the number of returned hits and in the list of individual articles depending on the search location and computing environment. To maintain scientific integrity and consistency, especially in systematic reviews, action is needed from both the scientific community and scientific search platforms to increase search consistency. Researchers are encouraged to report the search location, and database providers should make search algorithms transparent and revise access rules to titles behind paywalls.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.188
metaresearch head score (Gemma)0.667
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch, Bibliometrics
Consensus categoriesnone
DomainCandidate signal: Reproducibility · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.970
Threshold uncertainty score0.995

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.1880.667
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0020.003
Bibliometrics0.0300.033
Science and technology studies0.0020.005
Scholarly communication0.0080.008
Open science0.0030.007
Research integrity0.0020.001
Insufficient payload (model declined to judge)0.0030.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.406
GPT teacher head0.477
Teacher spread0.071 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designSimulation or modeling
DomainReproducibility
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations6
Published2020
Admission routes2
Has abstractyes

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