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Record W3013963381 · doi:10.1002/qua.26211

Structures, <i>g</i>‐tensors, and hyperfine coupling constants of L‐α‐alanine radicals in radiation dosimetry: An ab initio molecular dynamics simulation study

2020· article· en· W3013963381 on OpenAlexafffund
M. Janbazi, Yavar T. Azar, Farhood Ziaie, Khashayar Ghandi, Chérif F. Matta, Muhammad Shadman

Bibliographic record

VenueInternational Journal of Quantum Chemistry · 2020
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicRadiation Effects and Dosimetry
Canadian institutionsMount Saint Vincent UniversityUniversity of Guelph
FundersNatural Sciences and Engineering Research Council of CanadaUniversity of ZanjanCanada Foundation for InnovationMount Saint Vincent UniversityUniversity of GuelphUniversité Laval
KeywordsChemistryRadicalElectron paramagnetic resonanceAb initioDensity functional theoryAb initio quantum chemistry methodsHyperfine structureMoleculeComputational chemistryPhysical chemistryNuclear magnetic resonanceAtomic physicsOrganic chemistry

Abstract

fetched live from OpenAlex

Abstract Alanine is used as a transfer standard dosimeter for gamma ray and electron beam calibration. An important factor affecting its dosimetric response is humidity which can lead to errors in absorbed dose calculations. Ab initio molecular dynamics calculations were performed to determine the environmental effects on the electron paramagnetic resonance (EPR) parameters of L‐α‐alanine radicals in acidic and alkaline solutions. A new result, not dissimilar to the closed‐shell amino acid molecule alanine, is that the non‐zwitterionic form of the alanine radical is the stable form in the gas phase while the zwitterionic neutral alanine radical is not a stable structure in the gas phase. Geometric and EPR parameters of radicals in both gas and solution phases are found to be dependent on hydrogen bonding of water molecules with the polar groups and on dynamic solvation. Calculations on the optimized free radicals in the gas phase revealed that for the neutral radical, hydrogen bonding to water molecules drives a decrease in the magnitudes of g ‐tensor components g xx and g yy without affecting neither g zz component nor the hyperfine coupling constants (HFCCs). The transfer from the gas to solution phase of the alanine radical anion is accompanied with an increase in the spin density on the carboxylic group's oxygen atoms. However, for the neutral radical, this transfer from gas to solution phase is accompanied with the decrease in the spin density on oxygen atoms. Calculated isotropic HFCCs and g ‐tensor of all radicals are in good agreement with experiment in both acidic and alkaline solutions.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.684
Threshold uncertainty score0.242

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.017
GPT teacher head0.274
Teacher spread0.257 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2020
Admission routes2
Has abstractyes

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