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Record W3016306959 · doi:10.1002/hbm.25015

The <scp>ENIGMA</scp> Stroke Recovery Working Group: Big data neuroimaging to study brain–behavior relationships after stroke

2020· review· en· W3016306959 on OpenAlexafffund
Sook‐Lei Liew, Artemis Zavaliangos‐Petropulu, Neda Jahanshad, Catherine E. Lang, Kathryn S. Hayward, Keith R. Lohse, Julia M. Juliano, Francesca Assogna, Lee A. Baugh, A. K. Bhattacharya, Bavrina Bigjahan, Michael R. Borich, Lara A. Boyd, Amy Brodtmann, Cathrin M. Buetefisch, Winston D. Byblow, Jessica M. Cassidy, Adriana Bastos Conforto, R. Cameron Craddock, Michael A. Dimyan, Adrienne N. Dula, Elsa Ermer, Mark R. Etherton, Kelene A. Fercho, Chris M. Gregory, Shahram Hadidchi, Jess A. Holguin, Darryl Hwang, Simon Jung, Steven A. Kautz, Mohamed Salah Khlif, Nima Khoshab, Bokkyu Kim, Hosung Kim, Amy Kuceyeski, Martín Lotze, Bradley J. MacIntosh, John L. Margetis, Feroze B. Mohamed, Fabrizio Piras, Ander Ramos‐Murguialday, Geneviève Richard, Pamela Roberts, Andrew D. Robertson, Jane Maryam Rondina, Natalia S. Rost, Nerses Sanossian, Nicolas Schweighofer, Na Jin Seo, Mark S. Shiroishi, Surjo R. Soekadar, Gianfranco Spalletta, Cathy M. Stinear, Anisha Suri, Wai Kwong Tang, Gregory Thielman, Daniela Vecchio, Arno Villringer, Nick Ward, Emilio Werden, Lars T. Westlye, Carolee J. Winstein, George F. Wittenberg, Kristin A. Wong, Chunshui Yu, Steven C. Cramer, Paul M. Thompson

Bibliographic record

VenueHuman Brain Mapping · 2020
Typereview
Languageen
FieldMedicine
TopicAcute Ischemic Stroke Management
Canadian institutionsResearch Institute for AgingUniversity of TorontoOntario Brain InstituteUniversity of WaterlooSunnybrook Health Science CentreUniversity of British ColumbiaVancouver Coastal Health
FundersH2020 European Research CouncilNational Institute of General Medical SciencesNational Institute on AgingEinstein Stiftung BerlinNational Key Research and Development Program of ChinaHealth Research Council of New ZealandNational Institute of Neurological Disorders and StrokeHelse Sør-Øst RHFNational Center for Advancing Translational SciencesMedical Research CouncilNational Institutes of HealthMax-Planck-GesellschaftMinistero della SaluteDeutsche ForschungsgemeinschaftBundesministerium für Bildung und ForschungBrightFocus FoundationEunice Kennedy Shriver National Institute of Child Health and Human DevelopmentNational Alliance for Research on Schizophrenia and DepressionEberhard Karls Universität TübingenStroke AssociationU.S. Department of Veterans AffairsCenter for Integrated Healthcare, U.S. Department of Veterans AffairsNational Institute of Biomedical Imaging and BioengineeringCanadian Institutes of Health ResearchAmerican Heart AssociationBrain and Behavior Research FoundationNational Health and Medical Research CouncilNational Institute of Nursing ResearchNational Institute of Mental HealthHorizon 2020 Framework ProgrammeNorges ForskningsrådLeon Levy Foundation
KeywordsNeuroimagingStroke (engine)NeuroinformaticsData collectionHarmonizationDemographicsBig dataMedicinePsychologyPhysical medicine and rehabilitationData scienceNeuroscienceComputer scienceData mining

Abstract

fetched live from OpenAlex

The goal of the Enhancing Neuroimaging Genetics through Meta-Analysis (ENIGMA) Stroke Recovery working group is to understand brain and behavior relationships using well-powered meta- and mega-analytic approaches. ENIGMA Stroke Recovery has data from over 2,100 stroke patients collected across 39 research studies and 10 countries around the world, comprising the largest multisite retrospective stroke data collaboration to date. This article outlines the efforts taken by the ENIGMA Stroke Recovery working group to develop neuroinformatics protocols and methods to manage multisite stroke brain magnetic resonance imaging, behavioral and demographics data. Specifically, the processes for scalable data intake and preprocessing, multisite data harmonization, and large-scale stroke lesion analysis are described, and challenges unique to this type of big data collaboration in stroke research are discussed. Finally, future directions and limitations, as well as recommendations for improved data harmonization through prospective data collection and data management, are provided.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.028
metaresearch head score (Gemma)0.056
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Systematic review · Consensus signal: none
GenreCandidate signal: Review · Consensus signal: Review
Teacher disagreement score0.028
Threshold uncertainty score0.148

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0280.056
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0040.005
Bibliometrics0.0060.007
Science and technology studies0.0010.001
Scholarly communication0.0030.003
Open science0.0030.004
Research integrity0.0030.004
Insufficient payload (model declined to judge)0.0120.004

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.205
GPT teacher head0.348
Teacher spread0.143 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSystematic review
Domainnot available
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations93
Published2020
Admission routes2
Has abstractyes

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