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Indaziflam herbicidal action: a potent auxin signaling inhibitor

2020· article· en· W3016360756 on OpenAlexaffabout
Sara Behnami, Dario Bonetta

Bibliographic record

VenueThe FASEB Journal · 2020
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicPlant Molecular Biology Research
Canadian institutionsOntario Tech University
Fundersnot available
KeywordsPhyscomitrella patensAuxinMutantMutagenesisArabidopsisArabidopsis thalianaBiologyCell biologyChemistryBiochemistryGene

Abstract

fetched live from OpenAlex

Cellulose biosynthesis is a common feature of land plants. Therefore, cellulose biosynthesis inhibitors (CBIs) are useful tools in decoding fundamental aspects of cellulose biosynthesis. Here, we characterize the herbicide indaziflam, which has a unique mode of action for resistance management and appears to prevent plant growth by inhibiting cellulose biosynthesis and causes radial swelling and ectopic lignification; typical responses to treatment with CBIs. Previous work has demonstrated that Arabidopsis thaliana mutants that are indaziflam resistant can be identified through forward genetic screening. Since indaziflam is also active in the moss Physcomitrella patens , we took advantage of this system to attempt to understand the mode of action of indaziflam. Using UV‐induced mutagenesis, we generated mutants in Physcomitrella patens that were resistant to 30μM of indaziflam ( izr ), interestingly among the izr mutants; some were cross‐resistant to synthetic auxin 2,4‐D and NAA, which is predicted that indaziflam affects multiple pathways required for plant growth and development, since auxin affects the production and remodeling of plant cell wall either directly or indirectly. The izr mutants displayed a phenotype similar to that of auxin treated wild type plants, with small, undifferentiated, and leafless filaments, so we tested their responses to exogenous auxin, and it appears mutants were insensitive to synthetic auxin and started differentiation of chloronema to caulonemal filaments and gametophore development. To positionally clone the causative mutations, we have generated segregating populations by crossing the izr mutants with the Villersexel (Vx) wild type using a protoplast fusion technique. Our screen was designed to select mutant lines with indaziflam and auxin resistance; as a result, it establishes how critical elements within the indaziflam mode of action can refine auxin repressor activity, and have the long‐term developmental outcome. As a herbicide, indaziflam could potentially be used for weed management and eliminate the effects of these invasive grasses. Support or Funding Information NSERC (The Natural Sciences and Engineering Research Council of Canada)

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.059
GPT teacher head0.260
Teacher spread0.201 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2020
Admission routes2
Has abstractyes

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