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Immunolocalization of the Novel Protein FCHSD2 within Protrusive Actin‐Rich Bacterial Structures

2020· article· en· W3016648211 on OpenAlexaff
Brittany Dominique Walker, Le­onardo Almeida-Souza, Julian A. Guttman

Bibliographic record

VenueThe FASEB Journal · 2020
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicListeria monocytogenes in Food Safety
Canadian institutionsSimon Fraser University
Fundersnot available
KeywordsCell biologyActinEndocytosisBiologyClathrinActin cytoskeletonActin-binding proteinMicrofilamentActin remodelingCytoskeletonCellBiochemistry

Abstract

fetched live from OpenAlex

Listeria monocytogenes and enteropathogenic E. coli (EPEC) both exploit clathrin mediated endocytosis and the actin cytoskeleton for their disease processes. During L. monocytogenes infections clathrin is used for the microbes to invade their host’s cells and actin filaments are used to generate actin‐rich comet/rocket tails that propel the bacteria within the host cell cytoplasm. When the bacteria hit the host plasma membrane, the comet/rocket tails push the bacteria into neighbouring cells by forming a membrane distention housing the bacteria and the actin tail which forms a corresponding invagination in the neighbouring cell for eventual cell‐to‐cell spreading of the bacteria. EPEC on the other hand remains extracellular and sit atop infected cells on actin‐rich pedestal‐like structures that also recruit clathrin to their apical regions. The FCH and double SH3 domains protein 2 (FCHSD2) functions to activate actin polymerization during clathrin mediated endocytosis. As both L. monocytogenes an EPEC utilize CME and actin polymerization we examined the localization of FCHSD2 during the infections. We found that during L. monocytogenes infections FCHSD2 was absent from the bacterial comet tails, but was prominent at L. monocytogenes actin‐rich membrane protrusions. During EPEC infections FCHSD2 was present within the actin core of the pedestals but did not colocalize with clathrin. Together, this work suggests the FCHSD2 protein has a distinct role at actin‐rich bacterial structures that interact at the membrane which is independent of clathrin.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.046
GPT teacher head0.275
Teacher spread0.229 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2020
Admission routes1
Has abstractyes

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