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Record W3016834294 · doi:10.1038/s41592-020-0828-6

Publisher Correction: Genetic tool development in marine protists: emerging model organisms for experimental cell biology

2020· erratum· en· W3016834294 on OpenAlexaff
Drahomíra Faktorová, R. Ellen R. Nisbet, José A. Fernández Robledo, Elena Casacuberta, Lisa Sudek, Andrew E. Allen, Manuel Ares, Cristina Aresté, Cecilia Balestreri, Adrian C. Barbrook, Patrick C. Beardslee, Sara J. Bender, David S. Booth, François-Yves Bouget, Chris Bowler, Susana A. Breglia, Colin Brownlee, Gertraud Burger, Heriberto Cerutti, Rachele Cesaroni, Miguel Ángel Chiurillo, Thomas E. Clemente, Duncan B. Coles, Jackie L. Collier, Elizabeth C. Cooney, Kathryn J. Coyne, Roberto Docampo, Christopher L. Dupont, Virginia P. Edgcomb, Elin Einarsson, Pía A. Elustondo, Fernán Federici, Verónica Freire-Benéitez, Nastasia J. Freyria, Kodai Fukuda, Paulo Alonso Gaona-García, Peter R. Girguis, Fatma Gomaa, Sebastian G. Gornik, Jian Guo, Vladimı́r Hampl, Yutaka Hanawa, Esteban R. Haro-Contreras, Elisabeth Hehenberger, Andrea Highfield, Yoshihisa Hirakawa, Amanda Hopes, Christopher J. Howe, Ian Hu, Jorge Ibañez-Vega, Nicholas A. T. Irwin, Yuu Ishii, Natalia Janowicz, Adam C. Jones, Ambar Kachale, Konomi Fujimura‐Kamada, Binnypreet Kaur, Jonathan Z. Kaye, Eleanna Kazana, Patrick J. Keeling, Nicole King, Lawrence A. Klobutcher, Noelia Lander, Imen Lassadi, Zhu‐Hong Li, Senjie Lin, Jean-Claude Lozano, Fulei Luan, Shinichiro Maruyama, Tamara Matúte, Cristina Miceli, Jun Minagawa, Mark Moosburner, Sebastián R. Najle, Deepak Nanjappa, Isabel Nimmo, Luke M. Noble, Anna M. G. Novák Vanclová, Mariusz Nowacki, Isaac Núñez, Arnab Pain, Angela Piersanti, Sandra Pucciarelli, Jan Pyrih, Joshua S. Rest, Mariana Rius, Deborah Robertson, Albane Ruaud, Iñaki Ruiz‐Trillo, Monika Abedin Sigg, Pamela A. Silver, Claudio H. Slamovits, G. Jason Smith, Brittany N. Sprecher, Rowena Stern, Estienne C. Swart, Anastasios D. Tsaousis, Lev Tsypin, Aaron P. Turkewitz, Jernej Turnšek, Matus Valach, Valérie Vergé, Peter von Dassow, Tobias von der Haar, Ross F. Waller, Lu Wang, Xiaoxue Wen, G. C. Wheeler, April Woods, Huan Zhang, Thomas Möck, Alexandra Z. Worden, Julius Lukeš

Bibliographic record

VenueNature Methods · 2020
Typeerratum
Languageen
FieldEnvironmental Science
TopicMicrobial Community Ecology and Physiology
Canadian institutionsAGADA BiosciencesUniversity of British ColumbiaUniversité de MontréalDalhousie University
FundersLeverhulme TrustGordon and Betty Moore Foundation
KeywordsBiologyComputational biologySynthetic biologyModel organismEvolutionary biologyGeneticsGene

Abstract

fetched live from OpenAlex

An amendment to this paper has been published and can be accessed via a link at the top of the paper.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.005
metaresearch head score (Gemma)0.055
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Other · Consensus signal: none
Teacher disagreement score0.082
Threshold uncertainty score0.275

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0050.055
Meta-epidemiology (narrow)0.0020.002
Meta-epidemiology (broad)0.0020.002
Bibliometrics0.0050.003
Science and technology studies0.0050.002
Scholarly communication0.0060.003
Open science0.0040.002
Research integrity0.0070.014
Insufficient payload (model declined to judge)0.0820.065

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.017
GPT teacher head0.325
Teacher spread0.308 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreOther

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2020
Admission routes1
Has abstractyes

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