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The Effects of XIAP on Alzheimer's Disease

2020· article· en· W3017107311 on OpenAlexaff
Brendan C. MacGillivray, Nicolás Alonso Cobo, Kathleen Bai, Margaret Efraim, Celine Fu, Henry Fu, Ayaka Fujikawa, Lauchlann Goodall, Brian Han, Lucy He, Isabela Hernandez‐Oviedo, Richard Ilianu, Rebecca Muscant, Catherina Niu, Victoria Ramírez, Hana Samad, Iza Ticala, Oscar Wang, Andrew Wong, Robert G. Korneluk

Bibliographic record

VenueThe FASEB Journal · 2020
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicUbiquitin and proteasome pathways
Canadian institutionsAgricultural Research Institute of Ontario
Fundersnot available
KeywordsXIAPInhibitor of apoptosisCaspaseCell biologyApoptosisProgrammed cell deathChemistryBiologyCancer researchBiochemistry

Abstract

fetched live from OpenAlex

Inhibitor of apoptosis proteins (IAPs) prevents programmed cell death by interfering with the activation of caspases that cleave cytoskeleton fibres. X‐chromosome‐linked inhibitor of apoptosis protein (XIAP) is believed to be the most potent natural apoptosis inhibitor in the IAP family, as it effectively suppresses both intrinsic and extrinsic pathways of apoptosis. XIAP is characterized by three Baculoviral IAP Repeat (BIR) domains, a ubiquitin‐associated (UBA) domain, and one Really Interesting New Gene (RING) domain. The BIR‐2 domain binds with caspases 3 and 7, whereas the BIR‐3 domain binds with caspase 9. XIAP is closely associated with several neurodegenerative disorders, including Alzheimer’s Disease (AD), which affects over 44 million individuals worldwide. AD is characterized by the formation of ß‐amyloid plaques and tau tangles, which obstruct nutrients from reaching the nerve cells and result in cell death. Caspases cleave tau proteins that consequently collapse into tangles. Since XIAP prevents the activation of caspases, a lower level of XIAP leads to the acceleration of nerve cell death and cognitive impairment. While XIAP is unable to arrest tangle formation, an increase of XIAP will lessen cognitive decline. Support or Funding Information The Ashbury MSOE Center for BioMolecular Modeling SMART Team used 3D modelling and printing technology to examine the effects of the XIAP BIR‐3 and BIR‐2 domains on the caspases that interact with the Alzheimer’s pathway.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.009

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0030.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.015
GPT teacher head0.240
Teacher spread0.224 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2020
Admission routes1
Has abstractyes

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