MétaCan
Menu
Back to cohort
Record W3022069165 · doi:10.1038/s41467-020-16178-9

Variation among 532 genomes unveils the origin and evolutionary history of a global insect herbivore

2020· article· en· W3022069165 on OpenAlexafffund
Minsheng You, Fushi Ke, Shijun You, Zhangyan Wu, Qingfeng Liu, Weiyi He, Simon W. Baxter, Zhiguang Yuchi, Liette Vasseur, Geoff M. Gurr, Christopher M. Ward, Hugo Cerda, Guang Yang, Peng Lü, Yuan-Chun Jin, Miao Xie, Lijun Cai, Carl J. Douglas, Murray B. Isman, Mark S. Goettel, Qisheng Song, Qing‐Hai Fan, Gefu Wang‐Pruski, David C. Lees, Zhen Yue, Jianlin Bai, Tiansheng Liu, Lianyun Lin, Yunkai Zheng, Zhaohua Zeng, Sheng Lin, Yue Wang, Qian Zhao, Xiaofeng Xia, Wenbin Chen, Li‐Lin Chen, Mingmin Zou, Jinying Liao, Qiang Gao, Xiaodong Fang, Ye Yin, Huanming Yang, Jian Wang, Liwei Han, Yingjun Lin, Yanping Lu, Mousheng Zhuang

Bibliographic record

VenueNature Communications · 2020
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicPlant and animal studies
Canadian institutionsDalhousie UniversityBrock UniversityAgriculture and Agri-Food CanadaUniversity of British Columbia
FundersNational Key Research and Development Program of ChinaRecruitment Program of Global ExpertsFujian Agriculture and Forestry UniversityUniversity of British ColumbiaNational Natural Science Foundation of China
KeywordsHerbivoreVariation (astronomy)InsectBiologyGenomeEvolutionary biologyGenetic variationEcologyGeneticsGene

Abstract

fetched live from OpenAlex

The diamondback moth, Plutella xylostella is a cosmopolitan pest that has evolved resistance to all classes of insecticide, and costs the world economy an estimated US $4-5 billion annually. We analyse patterns of variation among 532 P. xylostella genomes, representing a worldwide sample of 114 populations. We find evidence that suggests South America is the geographical area of origin of this species, challenging earlier hypotheses of an Old-World origin. Our analysis indicates that Plutella xylostella has experienced three major expansions across the world, mainly facilitated by European colonization and global trade. We identify genomic signatures of selection in genes related to metabolic and signaling pathways that could be evidence of environmental adaptation. This evolutionary history of P. xylostella provides insights into transoceanic movements that have enabled it to become a worldwide pest.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.110
Threshold uncertainty score0.216

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.065
GPT teacher head0.236
Teacher spread0.171 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations91
Published2020
Admission routes2
Has abstractyes

Explore more

Same venueNature CommunicationsSame topicPlant and animal studiesFrench-language works237,207