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Record W3023998728 · doi:10.1101/2020.05.15.066662

Late Quaternary habitat suitability models for chimpanzees ( <i>Pan troglodytes</i> ) since the Last Interglacial (120,000 BP)

2020· preprint· en· W3023998728 on OpenAlexaff
Christopher D. Barratt, Jack D. Lester, Paolo Gratton, Renske E. Onstein, Ammie K. Kalan, Maureen S. McCarthy, Gaëlle Bocksberger, Lauren C. White, Linda Vigilant, Paula Dieguez, Abdulai Barrie, Thierry Aebischer, Anthony Agbor, Alfred Kwabena Assumang, Emma Bailey, Mattia Bessone, Bartelijntje Buys, Joana Silva Carvalho, Rebecca Chancellor, Heather Cohen, Emmanuel Danquah, Tobias Deschner, Zacharie N. Dongmo, Osiris A. Doumbé, Jef Dupain, Chris S. Duvall, Manasseh Eno‐Nku, Gilles Etoga, Anh Galat‐Luong, Rosa M. Garriga, Sylvain Gatti, Andrea Ghiurghi, Annemarie Goedmakers, Anne‐Céline Granjon, Dismas Hakizimana, Nadia Haydar, Josephine Head, Daniela Hedwig, Ilka Herbinger, Veerle Hermans, Sorrel Jones, Jessica Junker, Parag Kadam, Mohamed Kambi, Ivonne Kienast, Célestin Yao Kouakou, Kouamé Paul N’Goran, Kevin E. Langergraber, Juan Lapuente, Anne Laudisoit, Kevin Lee, Fiona Maisels, Deborah L. Moore, Bethan J. Morgan, Emily Neil, Sonia Nicholl, Louis Nkembi, Anne Ntongho, Christopher Orbell, Lucy Jayne Ormsby, Liliana Pacheco, A. Piel, Lilian Pintea, Andrew J. Plumptre, Aaron Rundus, Crickette Sanz, Volker Sommer, Tenekwetche Sop, Fiona A. Stewart, Jacqueline Sunderland‐Groves, Nikki Tagg, Angelique Todd, Els Ton, Joost van Schijndel, Hilde Vanleeuwe, Elleni Vendras, Adam Welsh, José Francisco Carminatti Wenceslau, Erin G. Wessling, Jacob Willie, Roman M. Wittig, Yoshihiro Nakashima, Yisa Ginath Yuh, Kyle Yurkiw, Christophe Boesch, Mimi Arandjelovic, Hjalmar S. Kühl

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2020
Typepreprint
Languageen
FieldPsychology
TopicPrimate Behavior and Ecology
Canadian institutionsConcordia UniversityUniversity of British Columbia
FundersDeutsches Zentrum für integrative Biodiversitätsforschung Halle-Jena-LeipzigHelmholtz-Zentrum für UmweltforschungDeutsche Forschungsgemeinschaft
KeywordsTroglodytesEcologyHabitatInterglacialBiological dispersalGeographyQuaternaryPopulationTaxonBiologyPaleontologyDemography

Abstract

fetched live from OpenAlex

Abstract Aim Paleoclimate reconstructions have enhanced our understanding of how past climates may have shaped present-day biodiversity. We hypothesize that habitat stability in historical Afrotropical refugia played a major role in the habitat suitability and persistence of chimpanzees ( Pan troglodytes ) during the late Quaternary. We aimed to build a dynamic model of changing habitat suitability for chimpanzees at fine spatio-temporal scales to provide a new resource for understanding their ecology, behaviour and evolution. Location Afrotropics. Taxon Chimpanzee ( Pan troglodytes ), including all four subspecies ( P. t. verus, P. t. ellioti, P. t. troglodytes, P. t. schweinfurthii ). Methods We used downscaled bioclimatic variables representing monthly temperature and precipitation estimates, historical human population density data and an extensive database of georeferenced presence points to infer chimpanzee habitat suitability at 62 paleoclimatic time periods across the Afrotropics based on ensemble species distribution models. We mapped habitat stability over time using an approach that accounts for dispersal between time periods, and compared our modelled stability estimates to existing knowledge of Afrotropical refugia. Our models cover a spatial resolution of 0.0467 degrees (approximately 5.19 km 2 grid cells) and a temporal resolution of every 1,000–4,000 years dating back to the Last Interglacial (120,000 BP). Results Our results show high habitat stability concordant with known historical forest refugia across Africa, but suggest that their extents are underestimated for chimpanzees. We provide the first fine-grained dynamic map of historical chimpanzee habitat suitability since the Last Interglacial which is suspected to have influenced a number of ecological-evolutionary processes, such as the emergence of complex patterns of behavioural and genetic diversity. Main Conclusions We provide a novel resource that can be used to reveal spatio-temporally explicit insights into the role of refugia in determining chimpanzee behavioural, ecological and genetic diversity. This methodology can be applied to other taxonomic groups and geographic areas where sufficient data are available.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.600
Threshold uncertainty score0.999

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0020.001
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.033
GPT teacher head0.277
Teacher spread0.244 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations6
Published2020
Admission routes1
Has abstractyes

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